NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss38543485           
Submitter
HandleABI
Submitter SNP IDhCV9579248
RefSNP(rs#)rs701848
Submitted Batch IDxplore_hum_chr10_1
Submitted DateJul 15, 2005
Publication CitedN.D.
First entry to dbSNPJul 15 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38543485|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TTGCAGTTTT GCACATTTTT TAAATGTCAT TAACTGTTAG GGAATTTTAC TTGAATACTG
 AATACATATA ATGTTTATAT TAAAAAGGAC ATTTGTGTTA AAAAGGAAAT TAGAGTTGCA
 GTAAACTTTC AATGCTGCAC ACAAAAAAAA GACATTTGAT TTTTCAGTAG AAATTGTCCT
 ACATGTGCTT TATTGATTTG CTATTGAAAG AATAGGGTTT TTTTTTTTTT TTTTTTTTTT
 TTTTAAATGT GCAGTGTTGA ATCATTTCTT CATAGTGCTC CCCCGAGTTG GGACTAGGGC
 Y
 TCAATTTCAC TTCTTAAAAA AAATCATCAT ATATTTGATA TGCCCAGACT GCATACGATT
 TTAAGCGGAG TACAACTACT ATTGTAAAGC TAATGTGAAG ATATTATTAA AAAGGTTTTT
 TTTTCCAGAA ATTTGGTGTC TTCAAATTAT ACCTTCACCT TGACATTTGA ATATCCAGCC
 ATTTTGTTTC TTAATGGTAT AAAATTCCAT TTTCAATAAC TTATTGGTGC TGAAATTGTT
 CACTAGCTGT GGTCTGACCT AGTTAATTTA CAAATACAGA TTGAATAGGA CCTACTAGAG

  Submitted Frequency for ss38543485 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AoD_Chinese
EAST ASIA
90T=0.63000000
C=0.37000000
xplore_hum_chr10_1ABI
AoD_African_American
NORTH AMERICA
90T=0.83999997
C=0.16000000
xplore_hum_chr10_1ABI
AoD_Japanese
EAST ASIA
90T=0.63000000
C=0.37000000
xplore_hum_chr10_1ABI
AoD_Caucasian
NORTH AMERICA
92T=0.51999998
C=0.47999999
xplore_hum_chr10_1ABI


  dbSNP summary of Genotypes for ss38543485 back to top
No sufficient data to compute Hardy-weinberg probability for ss38543485.


  Submitted individual genotype for ss38543485 back to top
There is no individual genotype data for ss38543485.