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Submitted SNP(ss) Details: ss38565373           
Submitter
HandleABI
Submitter SNP IDhCV110494
RefSNP(rs#)rs9414742
Submitted Batch IDxplore_hum_chr10_1
Submitted DateJul 15, 2005
Publication CitedN.D.
First entry to dbSNPJul 15 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss38565373|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 CTTTTGGCCT TTCCCCTCCA GTATGGTCTC AACTGGGTAG AAACTCATAT TTTTAAATAC
 ACAATAAATA TCATGGCTTA GCAATCTTTT TATCAAAATC AAGTGGAATG AGAGTATAAT
 GTTTATTTAT CAAGTTAGTT TTGCAATCCC ATGTAGAATA TGGTTAAGTA ACTTATTTTA
 GTGTCTATTT CCATTTCTTA ATCCTTTAAG TTTTTCTAAA ACATTTGAAA GGAAATAGAG
 ATTATCTGAT ATATGCTGTA AAATGACAAA CATTGTCTGA CTCAACATAT TTGAGATAAC
 Y
 AATTGTTGAT TTTAAAAATC CAGTCCCAAA GTAGCTTATG AAATAGGATA AGAAACTTCA
 TATTAGAGTT ACAGAAGACA AAATAATCAG TGTGATTCAT TCTACTTTAT CTCCACATTT
 TGACTGGAAC TTTTCATCAC TTCTTTTTAT TCACTTTGGT CTGGGATTTC AAAAACATTT
 AAAGTGATGG CAATATGTAT AATGGTAATA TCAATCTTTA AAAATACACA TAAAAAGTTA
 ACATAAAGGA AAACTAACTG ATTAGTGACA GAAAATAAAC TGGTAACTTT TAGCCACTTA

  Submitted Frequency for ss38565373 back to top
There is no frequency submission for ss38565373.


  dbSNP summary of Genotypes for ss38565373 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU118118C=0.71186441
T=0.28813559C/C=0.52542371
C/T=0.37288135
T/T=0.10169491
Pr(chiSq=0.489,df=1)
=0.527
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090C=0.52222222
T=0.47777778C/T=0.46666667
C/C=0.28888890
T/T=0.24444444
Pr(chiSq=0.189,df=1)
=0.752
Genotype
Freq.
HapMap-JPT8686C=0.73255813
T=0.26744187C/C=0.48837209
C/T=0.48837209
T/T=0.02325581
Pr(chiSq=2.610,df=1)
=0.150
Genotype
Freq.
HapMap-YRI120120C=0.59166664
T=0.40833333C/T=0.55000001
C/C=0.31666666
T/T=0.13333334
Pr(chiSq=1.147,df=1)
=0.294
Genotype
Freq.

  Submitted individual genotype for ss38565373 back to top
There is no individual genotype data for ss38565373.