Submitted SNP(ss) Details: ss3916790

Submitted SNP(ss) Details: ss3916790

Submitter
Handle	SC_JCM
Submitter SNP ID	AL161445.10_16769
RefSNP(rs#)	rs869
Submitted Batch ID	21-SEP-2001e
Submitted Date	Sep 25, 2001
Publication Cited	[1] Clone overlap SNPs detected from the public human 19-Mar-2001 draft sequence [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Sep 25 2001 12:00:00:000AM

Resource Links
GenBank Accession	AL161445 AL162590
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	Overlap_SNPs_by_SsahaSNP
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/a

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 1
Genotype Submission	N.D.
Haplotype	N.D.

Comment
seqversion:AL161445.10position:16769seqversion:AL162590.9position:-37993unfin_quality:99

Fasta sequence (Legend)

 GCACAGTGAT TGCAGTGGTT GCATACCACT GAAAGAAGGG GGTGGGGGGA GGACGTAACA
 TTAAGAATGG TTGAAATTTT GTGTTTTTCT GTTAAATTAC AACTACCAAA AAGATCACAC
 CAATCCAATT TTAGCAGCAC TCTCCGAATT TTCACGAATA AGAAAACCAT AATTTAAAGA
 AAAATTCTAA CCTATTTCAC
 R
 ACAATTTAGC AATTCTATCA CCGGGAATGT GTTCCACGGC CACCAAATTT TGGGATGTGT
 ACAGTTCTGA CTCTGGGGTG ACACTGCGAA CACATCAAGA AACCCGCAAA GGCATAAACA
 CCTTGCAGAG CTAAGAATTC ACATGCCGAG CCAAGTTGGG GGCAAAATAT CCCACTCGTC
 CTGGTCATCT GGAAAGCCAT

Submitted Frequency for ss3916790

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.67000002	A=0.33000001	0.442 +/-0.033			1_2004	SEQUENOM

dbSNP summary of Genotypes for ss3916790

No sufficient data to compute Hardy-weinberg probability for ss3916790.

Submitted individual genotype for ss3916790

There is no individual genotype data for ss3916790.

Disclaimer Privacy statement