NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss396048           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000621-232178
RefSNP(rs#)rs4900
Submitted Batch IDOVLP-000621-1
Submitted DateJun 30, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPJun 30 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AC024721 SequenceAccession1:AC024721 SequenceContigName1:Contig29 SequenceContigPosition1:3302 SequenceLocalName2:LLNL-F_198G6 SequenceAccession2:AC005262 SequenceContigName2:Contig11 SequenceContigPosition2:18323 PolyBayesConfidence:99

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss396048|allelePos=101|len=299|taxid=9606|alleles='A/G'|mol=Genomic
 AGTCCACCAG GTGCGAGTAC AGGATCTTGT CCTCCAGCAG GTCCTTCTTG TTGAGGAAGA
 GGATGACGGA GGAGTTCTGG AACCAGGGGT AGGTGATGAT
 R
 GTCCGGAACA GGGCTTTGCT CTCCTCCATC CGGTTCTGGC GGGAGCGAAG GCAGAGGGAA
 TCAGAGGGGC CCTCCCCACT GCACACAGCC CAAGGGGCAG CTGGGGGGAC CCAGGTGAGG
 GGACCCAGGC TTGGCAGGTG GGGAAGGCCC GGCCCCCAAC GCTGCCCCTG CTCAGGGCAG
 GGCCCACCTC GTTGTCCG

  Submitted Frequency for ss396048 back to top
There is no frequency submission for ss396048.


  dbSNP summary of Genotypes for ss396048 back to top
No sufficient data to compute Hardy-weinberg probability for ss396048.


  Submitted individual genotype for ss396048 back to top
There is no individual genotype data for ss396048.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement