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Submitted SNP(ss) Details: ss39725817           
Submitter
HandleABI
Submitter SNP IDhCV30931537
RefSNP(rs#)rs12768206
Submitted Batch IDxplore_hum_chr10_2
Submitted DateJul 16, 2005
Publication CitedN.D.
First entry to dbSNPJul 16 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss39725817|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 GTGGATGTCA CTAGGAGGCA GAGGTTGCAA TGAACTGAGA TGGTGAGATG ATGCCACTGC
 ACTCAAGCCT GGGTGACGAG CAGGACCCCT GCCAAAAAAC AAAGCCAGCA GGTCTGGGCT
 AACCTTTAAT TTCTTCTTCT ATGAAGTGAG ATAATTGGAC AAGACATCTT TTACAGGCAG
 CTCTAAAAGA TTACAATGCT GGGATAATTG GGAAAGACCT ACACTCTAAG AATCTGCCTT
 AGAGTGTAAG ACCTACACTC TTTCCAGGGA CAGCCCTGAG GTAGACAGGC TCTCTAGAAG
 R
 TGGACAGGCT CTCTAGAAGG TGGACAGTCT CTCTAGAAGG TAGACAGGCT CTCTAGAAGG
 TAGACAGGCT CTCTAGAGGG TGGACAGGCT CTCTAGAAGG TGGACAGGCT CTCTAGAAGG
 TGGACAGGCT CTCTAGAAGG TGGACAGGCT CTCTAGAAGG TAGACAGGCT CTCTAGAAGG
 TGGACAGGCT CTCTAGAAGG TAGACAGGCT CTCTAGAAGG TGGCCAGAAG GGGCTGTTCT
 TCCTGGCCAA TCAGAACTGA TCACTGGTGT TTCTGGATTT GCCTCCCAAG ATAAGATAAC

  Submitted Frequency for ss39725817 back to top
There is no frequency submission for ss39725817.


  dbSNP summary of Genotypes for ss39725817 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.50833333
G=0.49166667A/G=0.44999999
A/A=0.28333333
G/G=0.26666668
Pr(chiSq=0.597,df=1)
=0.479
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.87777776
G=0.12222222A/A=0.75555557
A/G=0.24444444
Pr(chiSq=0.200,df=1)
=0.655
Genotype
Freq.
HapMap-JPT8888A=0.76136363
G=0.23863636A/A=0.59090906
A/G=0.34090909
G/G=0.06818182
Pr(chiSq=0.168,df=1)
=0.752
Genotype
Freq.
HapMap-YRI120120G=0.66666669
A=0.33333334A/G=0.46666667
G/G=0.43333334
A/A=0.10000000
Pr(chiSq=0.150,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss39725817 back to top
There is no individual genotype data for ss39725817.

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