NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss4040971           
Submitter
HandleSC_JCM
Submitter SNP IDJ01415.1_4104
RefSNP(rs#)rs1117205
Submitted Batch ID21-SEP-2001f
Submitted DateSep 26, 2001
Publication Cited[1] Clone overlap SNPs detected from the public human 19-Mar-2001 draft sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPSep 26 2001 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlap_SNPs_by_SsahaSNP
Ascertainment Samplesize6
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
seqversion:J01415.1position:4104seqversion:AX039612.1position:4104seqversion:X93334.1position:3528seqversion:X62996.1position:3528seqversion:D38112.1position:3527seqversion:V00662.1position:4104

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4040971|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 CTTGCCGAAG GGGAGTCCGA ACTAGTCTCA GGCTTCAACA TCGAATACGC CGCAGGCCCC
 TTCGCCCTAT TCTTCATAGC CGAATACACA AACATTATTA TAATAAACAC CCTCACCACT
 ACAATCTTCC TAGGAACAAC ATATGACGCA CTCTCCCCTG AACTCTACAC AACATATTTT
 GTCACCAAGA CCCTACTTCT
 R
 ACCTCCCTGT TCTTATGAAT TCGAACAGCA TACCCCCGAT TCCGCTACGA CCAACTCATA
 CACCTCCTAT GAAAAAACTT CCTACCACTC ACCCTAGCAT TACTTATATG ATATGTCTCC
 ATACCCATTA CAATCTCCAG CATTCCCCCT CAAACCTAAG AAATATGTCT GATAAAAGAG
 TTACTTTGAT AGAGTAAATA

  Submitted Frequency for ss4040971 back to top
There is no frequency submission for ss4040971.


  dbSNP summary of Genotypes for ss4040971 back to top
No sufficient data to compute Hardy-weinberg probability for ss4040971.


  Submitted individual genotype for ss4040971 back to top
There is no individual genotype data for ss4040971.