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Submitted SNP(ss) Details: ss41134670           
Submitter
HandleABI
Submitter SNP IDhCV29815760
RefSNP(rs#)rs9424284
Submitted Batch IDxplore_hum_chr1_2
Submitted DateJul 16, 2005
Publication CitedN.D.
First entry to dbSNPJul 16 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss41134670|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 GGGAGTCAGG GGACAGGAAG GGAAGCGGGG GAAGGAGAGC AAGAGGGAGG GCAAGAGAGT
 CACCATCTGG GTGGGGCGCA AAGCCGCACA TGTTGGGGAG TCCTTGTCAG AAATGCAAGG
 CCCTGCTGAC GAGGTCGCAC GCTGGCCCCT CAGGCCAGCA CTGGGCACCC AGTGGCGGCC
 TCAGCAGGAA ATGAAGCCAG AGATTTCACA CATGAAGGGT GGATGAGGGT GGCGTCAGTT
 TTCACTTGTG TGAGGGAGCA AGCAGGCGCG CCCGCAAGGA TGTGAGGTGC ACACTGGCTT
 Y
 GGGGAGGATG AGTTACACAG GGGGTGGCTA GGGGTCCTCC TGACACCTGA TGGGATGAAA
 TGCCGTCACC TGTCACCCGG AGCTGACACT CTACTGCAGG AAACACAACC CTCGCAGTGG
 CTAAGCTGAC GGCAGCAACG TGGGTCCTGA CTCTGGCCTG GCATACCGGC TGCCTTCCGG
 GCCCATGGCT TTTGCAGGGG ACCTGCTGCC GGGGAAGGAT CCTAACTTCA TGGTGGTGAC
 AGGCTGACAT AAACCAACCC AATAAGGAGC GCCAGCCCCT GAGTGAGCCC CACTCCCTCC

  Submitted Frequency for ss41134670 back to top
There is no frequency submission for ss41134670.


  dbSNP summary of Genotypes for ss41134670 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU114114C=0.57894737
T=0.42105263C/T=0.45614034
C/C=0.35087720
T/T=0.19298245
Pr(chiSq=0.236,df=1)
=0.655
Genotype
Freq.
HapMap-HCB
EAST ASIA
8888C=0.75000000
T=0.25000000C/C=0.54545456
C/T=0.40909091
T/T=0.04545455
Pr(chiSq=0.364,df=1)
=0.584
Genotype
Freq.
HapMap-JPT8686C=0.62790698
T=0.37209302C/T=0.51162791
C/C=0.37209302
T/T=0.11627907
Pr(chiSq=0.387,df=1)
=0.584
Genotype
Freq.
HapMap-YRI120120C=0.97500002
T=0.02500000C/C=0.94999999
C/T=0.05000000
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss41134670 back to top
There is no individual genotype data for ss41134670.