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Submitted SNP(ss) Details: ss41185532           
Submitter
HandleABI
Submitter SNP IDhCV11639199
RefSNP(rs#)rs1805404
Submitted Batch IDxplore_hum_chr1_2
Submitted DateJul 16, 2005
Publication CitedN.D.
First entry to dbSNPJul 16 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss41185532|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 AAAATAAAGT ATATTAAAAA CAAAACAACT TTAAAGGCTA CATTCCAAGC ATCTGGAAAA
 ACAAAATACC AAATATCATG CAACAGATGA TGCTGAGTCC AGGAGGTGTT GCTGAAATAA
 CATGGGCACC ATACGCTTGA TCTGCACATG TGGGAGAGGG CAAGCTGGGG GAGGTTTGCT
 TTGCTCTCTG AGACGAGGCC CTCCTGGGAG CTTCAGGGTG GGGGCTGAAT GCCCATGCTG
 CCCCAGTATG TACACACCTG TCACTCCTCC AGCTTCCGCT GTCTTCTTGA CTTTCTGCTG
 R
 TCATCCCACC GAAGCTCAGA GAACCCATCC ACCTCAACGT CAGGGTGCCG GATGGAGTGG
 CCCACCTTCC AGAAGCAGGA GAAGTGGTAC CAGTGTGGGA CTTTTCCATC AAACATGGGC
 GACTAGAAGG AAGAGAAACA GAGGGAAGTA AGTAAGCAGT TAACTTTTGA CTTAGACCCA
 CTAGACCTTG ACCTTGACCT CGACCCCAGT CCCAGCCCCA GCAGTGGGAT AGCACATGAA
 ACTTTTGTTC TCCTATCTGT GAAAGGAGGA CAGCCTCCGC TCTCACATGA AGAGCTGCAG

  Submitted Frequency for ss41185532 back to top
There is no frequency submission for ss41185532.


  dbSNP summary of Genotypes for ss41185532 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224G=0.84821427
A=0.15178572G/G=0.73214287
A/G=0.23214285
A/A=0.03571429
Pr(chiSq=1.086,df=1)
=0.317
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.50000000A/G=0.62790698
A/A=0.18604651
G/G=0.18604651
Pr(chiSq=2.814,df=1)
=0.100
Genotype
Freq.
HapMap-JPT172172G=0.54651165
A=0.45348838A/G=0.39534885
G/G=0.34883720
A/A=0.25581396
Pr(chiSq=3.523,df=1)
=0.100
Genotype
Freq.
HapMap-YRI226226G=0.88053095
A=0.11946902G/G=0.78761059
A/G=0.18584071
A/A=0.02654867
Pr(chiSq=1.539,df=1)
=0.251
Genotype
Freq.
HAPMAP-ASW9898G=0.88775510
A=0.11224490G/G=0.77551019
A/G=0.22448979
Pr(chiSq=0.166,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHB8282G=0.54878050
A=0.45121950A/G=0.56097561
G/G=0.26829270
A/A=0.17073171
Pr(chiSq=0.722,df=1)
=0.403
Genotype
Freq.
HAPMAP-CHD168168G=0.53571427
A=0.46428570A/G=0.57142860
G/G=0.25000000
A/A=0.17857143
Pr(chiSq=1.858,df=1)
=0.200
Genotype
Freq.
HAPMAP-GIH174174G=0.87931037
A=0.12068965G/G=0.80459768
A/G=0.14942528
A/A=0.04597701
Pr(chiSq=7.622,df=1)
=0.010
Genotype
Freq.
HAPMAP-LWK176176G=0.87500000
A=0.12500000G/G=0.75000000
A/G=0.25000000
Pr(chiSq=0.421,df=1)
=0.527
Genotype
Freq.
HAPMAP-MEX9898G=0.61224490
A=0.38775510G/G=0.42857143
A/G=0.36734694
A/A=0.20408164
Pr(chiSq=2.510,df=1)
=0.150
Genotype
Freq.
HAPMAP-MKK286286G=0.87062937
A=0.12937063G/G=0.76223779
A/G=0.21678321
A/A=0.02097902
Pr(chiSq=0.203,df=1)
=0.655
Genotype
Freq.
HAPMAP-TSI176176G=0.89772725
A=0.10227273G/G=0.80681819
A/G=0.18181819
A/A=0.01136364
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss41185532 back to top
There is no individual genotype data for ss41185532.