Submitted SNP(ss) Details: ss43783790

Submitted SNP(ss) Details: ss43783790

Submitter
Handle	ABI
Submitter SNP ID	hCV2908327
RefSNP(rs#)	rs555001
Submitted Batch ID	xplore_hum_chr15_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Jul 18 2005 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AAGAGGAAAT TTAGAAACAA CAAGACCATT TCCCAAACTG GAGCTACACT CACCCTTTCT
 CAAAACATGC AATTTGGAAT TAATAGAGGT GATGACCCAC ACCCAGCTAT TTCAGAGCTC
 GGCTGAGAAA ACTTGTCACC CACATTCTGG CGTCAGTCTC ATCCAAGATG GCTTTGCCAG
 AGGGTCCCTC TTTCACCCAC TGCAGGGGGC AACTGTGAGT GGGCAGGGCT CCCGCTGCAC
 AGCTTCCTCC CTCCCCGGGC ACGCCAGGGA CCTCACCATG GCACACACCA CTCTGCTGAC
 R
 TAGACGGGGC TTCCCCGCAG AGCACAGTCT GTGGCTGGGT CAGTCTGGAA GTGCAGGCTC
 TTGTCTAGCA GCTTCAGGCA GATGTCTATG ATTTTGTCTT CAAACTTCGG GGGGAGAGGC
 AGAGAGGGAA GGCACCCATG CTTGTCACGT GGGAGTATGT AAAAAGTAAT GACTTCCCCC
 CAACCCTAGT GGAATATAAA CTCACTTGGA AGGTAACTGT GTCAAACAGA ACAGCCATGA
 ATTCCCTCCC ATTCAGGTGT GGGGTTTCAA AACTCTAGGG TCACAATTCA CCTGGTGCAT

Submitted Frequency for ss43783790

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AoD_Chinese - EAST ASIA	90	G=0.66000003	A=0.34000000				xplore_hum_chr15_1	ABI
AoD_Japanese - EAST ASIA	90	G=0.56999999	A=0.43000001				xplore_hum_chr15_1	ABI

dbSNP summary of Genotypes for ss43783790

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.68141592	A=0.31858408	A/G=0.47787610 G/G=0.44247788 A/A=0.07964602	Pr(chiSq=1.145,df=1) =0.294	Genotype Freq.
HapMap-HCB - EAST ASIA	84	84	G=0.51190478	A=0.48809522	A/G=0.40476191 G/G=0.30952382 A/A=0.28571430	Pr(chiSq=1.516,df=1) =0.251	Genotype Freq.
HapMap-JPT	172	172	G=0.55232561	A=0.44767442	A/G=0.43023255 G/G=0.33720931 A/A=0.23255815	Pr(chiSq=1.454,df=1) =0.251	Genotype Freq.
HapMap-YRI	224	224	A=0.81696427	G=0.18303572	A/A=0.66071427 A/G=0.31250000 G/G=0.02678571	Pr(chiSq=0.226,df=1) =0.655	Genotype Freq.
HAPMAP-ASW	98	98	A=0.68367344	G=0.31632653	A/A=0.48979592 A/G=0.38775510 G/G=0.12244898	Pr(chiSq=0.525,df=1) =0.479	Genotype Freq.
HAPMAP-CHB	82	82	G=0.60975611	A=0.39024389	A/G=0.43902439 G/G=0.39024389 A/A=0.17073171	Pr(chiSq=0.246,df=1) =0.655	Genotype Freq.
HAPMAP-CHD	170	170	G=0.62352943	A=0.37647060	G/G=0.43529412 A/G=0.37647060 A/A=0.18823530	Pr(chiSq=3.336,df=1) =0.100	Genotype Freq.
HAPMAP-GIH	176	176	G=0.53977275	A=0.46022728	A/G=0.53409094 G/G=0.27272728 A/A=0.19318181	Pr(chiSq=0.495,df=1) =0.527	Genotype Freq.
HAPMAP-LWK	180	180	A=0.75000000	G=0.25000000	A/A=0.60000002 A/G=0.30000001 G/G=0.10000000	Pr(chiSq=3.600,df=1) =0.100	Genotype Freq.
HAPMAP-MEX	100	100	G=0.60000002	A=0.40000001	A/G=0.47999999 G/G=0.36000001 A/A=0.16000000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	A=0.68181819	G=0.31818181	A/G=0.45454547 A/A=0.45454547 G/G=0.09090909	Pr(chiSq=0.324,df=1) =0.584	Genotype Freq.
HAPMAP-TSI	176	176	G=0.63068181	A=0.36931819	A/G=0.53409094 G/G=0.36363637 A/A=0.10227273	Pr(chiSq=1.889,df=1) =0.200	Genotype Freq.

Submitted individual genotype for ss43783790

There is no individual genotype data for ss43783790.

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