Submitted SNP(ss) Details: ss43937950

Submitted SNP(ss) Details: ss43937950

Submitter
Handle	ABI
Submitter SNP ID	hCV11639246
RefSNP(rs#)	rs1805411
Submitted Batch ID	xplore_hum_chr1_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Jul 18 2005 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 4
Genotype Summary	population count: 14
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AACCCAGGCA CAACAAATAC CCAGGGAAGG AAGGTGGTCT TTTAAGTATC TAAAGGGTTG
 TGGTGGGAAA GTGTAGTTAG CCTGTCCATG GAGCTCAGAT GTTGGAAGGG GAATAGACCA
 CCAGGAAGCA GGTCTCACAG GGGAGAGGGC TCTCAGCAGA GGCCATGGGA ACCCCTGGCT
 GTCTTTCCCT ACCCTGTCCT TTGCCCCCAC ATCTCTGCTG TCACCATTCC TCAGTTTGCA
 TCTCCCTGGC TTACTGACAG TCAGCGAAGG GAAACAGAGG AGTGGTATGG AACCTGTAGG
 K
 CCTTTGGGCC TCCCTTGAAC CCCTCACTGA ACCCCCAGGG CAACCCCGCA GCGCTCCACC
 CACCCTTCAC TCTTGACTCC TGGGAGCTGC TTCTTCAGGG CTTCTTTATC CTCTGTAGCA
 AGGAGGCTGA AGCCCTTGAG CTGACTCGCA CTGTACTCGG GCCGGAAACC CAGCTCCTCC
 CTGTTCTTGA CAAAGCAGCC TGGATGGTAC CAGCGGTCAA TCATGCCTAG CTGTGGCTTC
 TCCGGGTCCA CCATCTTCTT GGACAGGCGC ACCTGGCCCT GCAGGAAAAA CCATATGTGG

Submitted Frequency for ss43937950

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
AoD_Chinese - EAST ASIA	90	G=0.52999997	T=0.47000000	xplore_hum_chr1_1	ABI
AoD_Japanese - EAST ASIA	90	G=0.56999999	T=0.43000001	xplore_hum_chr1_1	ABI
AoD_African_American - NORTH AMERICA	90	G=0.88000000	T=0.12000000	xplore_hum_chr1_1	ABI
AoD_Caucasian - NORTH AMERICA	92	G=0.77999997	T=0.22000000	xplore_hum_chr1_1	ABI

dbSNP summary of Genotypes for ss43937950

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.84955752	T=0.15044248	G/G=0.73451328 G/T=0.23008850 T/T=0.03539823	Pr(chiSq=1.127,df=1) =0.294	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86		T=0.50000000	G/T=0.62790698 G/G=0.18604651 T/T=0.18604651	Pr(chiSq=2.814,df=1) =0.100	Genotype Freq.
HapMap-JPT	172	172	G=0.54651165	T=0.45348838	G/T=0.39534885 G/G=0.34883720 T/T=0.25581396	Pr(chiSq=3.523,df=1) =0.100	Genotype Freq.
HapMap-YRI	226	226	G=0.92477876	T=0.07522124	G/G=0.86725664 G/T=0.11504425 T/T=0.01769911	Pr(chiSq=3.386,df=1) =0.100	Genotype Freq.
HAPMAP-ASW	98	98	G=0.88775510	T=0.11224490	G/G=0.77551019 G/T=0.22448979	Pr(chiSq=0.166,df=1) =0.752	Genotype Freq.
HAPMAP-CHB	82	82	G=0.54878050	T=0.45121950	G/T=0.56097561 G/G=0.26829270 T/T=0.17073171	Pr(chiSq=0.722,df=1) =0.403	Genotype Freq.
HAPMAP-CHD	170	170	G=0.53529412	T=0.46470588	G/T=0.55294120 G/G=0.25882354 T/T=0.18823530	Pr(chiSq=1.055,df=1) =0.317	Genotype Freq.
HAPMAP-GIH	176	176	G=0.88068181	T=0.11931818	G/G=0.80681819 G/T=0.14772727 T/T=0.04545455	Pr(chiSq=7.767,df=1) =0.010	Genotype Freq.
HAPMAP-LWK	180	180	G=0.88333333	T=0.11666667	G/G=0.77777779 G/T=0.21111111 T/T=0.01111111	Pr(chiSq=0.053,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	G=0.63000000	T=0.37000000	G/G=0.46000001 G/T=0.34000000 T/T=0.20000000	Pr(chiSq=3.664,df=1) =0.100	Genotype Freq.
HAPMAP-MKK	286	286	G=0.89160842	T=0.10839161	G/G=0.79720283 G/T=0.18881118 T/T=0.01398601	Pr(chiSq=0.077,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	G=0.89204544	T=0.10795455	G/G=0.80681819 G/T=0.17045455 T/T=0.02272727	Pr(chiSq=1.163,df=1) =0.294	Genotype Freq.

Submitted individual genotype for ss43937950

There is no individual genotype data for ss43937950.

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