Submitted SNP(ss) Details: ss43979980

Submitted SNP(ss) Details: ss43979980

Submitter
Handle	ABI
Submitter SNP ID	hCV12076590
RefSNP(rs#)	rs2027548
Submitted Batch ID	xplore_hum_chr1_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Jul 18 2005 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 14
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GAGGAGCCGA GCACGTGGGG AAGTGGAGGG TGGGCGTGTA CGAGGCGGCC GTCCCCACTT
 AGCCTGCTGA GTCACTGCGT AGTGCACTGG GGCAGGGAGG AGAGCTTGGA ATCAGGTAGG
 AAAGAGAATC GTTTAACCAA ATAGGGCTGG GTTTTATTAG GCAAAAGGGA CCGCAGTGTT
 ACAGAATCTG GGCAAGATGT CACTGAGGGT CTCATTATCT GGATAAAGGC AATGACCAGA
 ACAAAATAAA ACCATTTCAT GCTGTATCCC AGTGACACAG GCTGGGCCTC AGTGAGTTGA
 R
 GCTCCTCGAT AAACCATTCA TAAATGTACG GAAGGAAATC ATGTGAACAC GTAGGTAAAC
 GGAACGACTG CTCAGACAGG GCTCACTAGA CGCTGTCCCC TCCCTGAACA CTCATGTACT
 GTACTCTGTG GCTATGGTCC CGCACTGACA CCACCACTGT CACCACCACT GCCATCCACA
 GGTGTGTCAC CTACTTCACT GGTCCCTTCT CCCCAGGCCC CTCACCTCTT CTCCAGGGCT
 GAAGTTCTCA TGACACAGGG GACACCGGTT TGCCAGCTTC TCCGGTTTGG CAGCTGAAAT

Submitted Frequency for ss43979980

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AoD_Caucasian - NORTH AMERICA	92	G=0.94000000	A=0.06000000				xplore_hum_chr1_1	ABI
AoD_African_American - NORTH AMERICA	90	G=0.98000002	A=0.02000000				xplore_hum_chr1_1	ABI

dbSNP summary of Genotypes for ss43979980

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	G=0.94690263	A=0.05309734	G/G=0.90265489 A/G=0.08849557 A/A=0.00884956	Pr(chiSq=1.626,df=1) =0.251	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86		A=0.50000000	A/G=0.39534885 A/A=0.30232558 G/G=0.30232558	Pr(chiSq=1.884,df=1) =0.200	Genotype Freq.
HapMap-JPT	172	172		A=0.50000000	A/G=0.53488374 A/A=0.23255815 G/G=0.23255815	Pr(chiSq=0.419,df=1) =0.527	Genotype Freq.
HapMap-YRI	222	222	G=0.98648649	A=0.01351351	G/G=0.97297299 A/G=0.02702703	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	G=0.95918369	A=0.04081633	G/G=0.91836733 A/G=0.08163265	Pr(chiSq=0.007,df=1) =1.000	Genotype Freq.
HAPMAP-CHB	82	82	G=0.53658539	A=0.46341464	A/G=0.53658539 G/G=0.26829270 A/A=0.19512194	Pr(chiSq=0.256,df=1) =0.655	Genotype Freq.
HAPMAP-CHD	168	168		A=0.50000000	A/G=0.47619048 A/A=0.26190478 G/G=0.26190478	Pr(chiSq=0.190,df=1) =0.752	Genotype Freq.
HAPMAP-GIH	176	176	G=0.74431819	A=0.25568181	G/G=0.54545456 A/G=0.39772728 A/A=0.05681818	Pr(chiSq=0.178,df=1) =0.752	Genotype Freq.
HAPMAP-LWK	176	176	G=0.97159094	A=0.02840909	G/G=0.94318181 A/G=0.05681818	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	G=0.73000002	A=0.27000001	G/G=0.50000000 A/G=0.46000001 A/A=0.04000000	Pr(chiSq=1.393,df=1) =0.251	Genotype Freq.
HAPMAP-MKK	284	284	G=0.92605633	A=0.07394366	G/G=0.85211265 A/G=0.14788732	Pr(chiSq=0.129,df=1) =0.752	Genotype Freq.
HAPMAP-TSI	176	176	G=0.93750000	A=0.06250000	G/G=0.88636363 A/G=0.10227273 A/A=0.01136364	Pr(chiSq=1.425,df=1) =0.251	Genotype Freq.

Submitted individual genotype for ss43979980

There is no individual genotype data for ss43979980.

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