Population ID -Class | Total Sample (2N) | Founder (2N) | Major Allele Freq. | Minor Allele Freq. | Genotype Freq. | HWE Goodness of Fit | Data Source | HapMap-CEU | 120 | 120 | A=0.69166666
| T=0.30833334 | A/A=0.48333332 A/T=0.41666666 T/T=0.10000000
| Pr(chiSq=0.032,df=1) =1.000 | Genotype Freq. |
HapMap-HCB - EAST ASIA | 90 | 90 | A=0.55555558
| T=0.44444445 | A/T=0.57777780 A/A=0.26666668 T/T=0.15555556
| Pr(chiSq=1.300,df=1) =0.254 | Genotype Freq. |
HapMap-JPT | 88 | 88 | A=0.60227275
| T=0.39772728 | A/T=0.61363637 A/A=0.29545453 T/T=0.09090909
| Pr(chiSq=3.471,df=1) =0.100 | Genotype Freq. |
HapMap-YRI | 120 | 120 | A=0.94166666
| T=0.05833333 | A/A=0.88333333 A/T=0.11666667
| Pr(chiSq=0.026,df=1) =1.000 | Genotype Freq. |
AX-AM - EAST ASIA | 20 | 20 | | A=0.50000000 | A/T=0.40000001 A/A=0.30000001 T/T=0.30000001
| Pr(chiSq=0.400,df=1) =0.584 | Genotype Freq. |
AX-AT - EAST ASIA | 20 | 20 | T=0.64999998
| A=0.34999999 | A/T=0.50000000 T/T=0.40000001 A/A=0.10000000
| Pr(chiSq=0.098,df=1) =1.000 | Genotype Freq. |
CEU - EUROPE | 120 | 120 | T=0.69166666
| A=0.30833334 | T/T=0.48333332 A/T=0.41666666 A/A=0.10000000
| Pr(chiSq=0.032,df=1) =1.000 | Genotype Freq. |
CHB - EAST ASIA | 90 | 90 | T=0.55555558
| A=0.44444445 | A/T=0.57777780 T/T=0.26666668 A/A=0.15555556
| Pr(chiSq=1.300,df=1) =0.254 | Genotype Freq. |
CN-CC - EAST ASIA | 52 | 52 | T=0.59615386
| A=0.40384614 | A/T=0.50000000 T/T=0.34615386 A/A=0.15384616
| Pr(chiSq=0.038,df=1) =1.000 | Genotype Freq. |
CN-GA - EAST ASIA | 60 | 60 | T=0.66666669
| A=0.33333334 | A/T=0.46666667 T/T=0.43333334 A/A=0.10000000
| Pr(chiSq=0.075,df=1) =1.000 | Genotype Freq. |
CN-HM - EAST ASIA | 52 | 52 | T=0.55769229
| A=0.44230768 | A/T=0.57692307 T/T=0.26923078 A/A=0.15384616
| Pr(chiSq=0.746,df=1) =0.403 | Genotype Freq. |
CN-JI - EAST ASIA | 58 | 58 | T=0.55172414
| A=0.44827586 | A/T=0.55172414 T/T=0.27586207 A/A=0.17241380
| Pr(chiSq=0.386,df=1) =0.584 | Genotype Freq. |
CN-JN - EAST ASIA | 58 | 58 | A=0.53448278
| T=0.46551725 | A/T=0.44827586 A/A=0.31034482 T/T=0.24137931
| Pr(chiSq=0.285,df=1) =0.655 | Genotype Freq. |
CN-SH - EAST ASIA | 42 | 42 | T=0.57142860
| A=0.42857143 | A/T=0.38095239 T/T=0.38095239 A/A=0.23809524
| Pr(chiSq=1.037,df=1) =0.317 | Genotype Freq. |
CN-UG - EAST ASIA | 52 | 52 | T=0.71153843
| A=0.28846154 | T/T=0.53846157 A/T=0.34615386 A/A=0.11538462
| Pr(chiSq=0.639,df=1) =0.439 | Genotype Freq. |
CN-WA - EAST ASIA | 112 | 112 | T=0.70535713
| A=0.29464287 | T/T=0.51785713 A/T=0.37500000 A/A=0.10714286
| Pr(chiSq=0.536,df=1) =0.479 | Genotype Freq. |
ID-AL - PACIFIC | 38 | 38 | A=0.68421054
| T=0.31578946 | A/A=0.52631581 A/T=0.31578946 T/T=0.15789473
| Pr(chiSq=1.377,df=1) =0.251 | Genotype Freq. |
ID-DY - PACIFIC | 24 | 24 | A=0.58333331
| T=0.41666666 | A/T=0.50000000 A/A=0.33333334 T/T=0.16666667
| Pr(chiSq=0.010,df=1) =1.000 | Genotype Freq. |
ID-JA - PACIFIC | 68 | 68 | A=0.51470590
| T=0.48529410 | A/T=0.50000000 A/A=0.26470590 T/T=0.23529412
| Pr(chiSq=0.000,df=1) =1.000 | Genotype Freq. |
ID-JV - PACIFIC | 38 | 38 | | A=0.50000000 | A/T=0.47368422 A/A=0.26315790 T/T=0.26315790
| Pr(chiSq=0.053,df=1) =1.000 | Genotype Freq. |
ID-KR - PACIFIC | 34 | 34 | A=0.52941179
| T=0.47058824 | A/T=0.35294119 A/A=0.35294119 T/T=0.29411766
| Pr(chiSq=1.446,df=1) =0.251 | Genotype Freq. |
ID-LA - PACIFIC | 40 | 40 | A=0.72500002
| T=0.27500001 | A/A=0.60000002 A/T=0.25000000 T/T=0.15000001
| Pr(chiSq=2.783,df=1) =0.100 | Genotype Freq. |
ID-LE - PACIFIC | 38 | 38 | A=0.78947371
| T=0.21052632 | A/A=0.57894737 A/T=0.42105263
| Pr(chiSq=0.509,df=1) =0.479 | Genotype Freq. |
ID-ML - PACIFIC | 24 | 24 | A=0.62500000
| T=0.37500000 | A/T=0.41666666 A/A=0.41666666 T/T=0.16666667
| Pr(chiSq=0.148,df=1) =0.752 | Genotype Freq. |
ID-MT - PACIFIC | 28 | 28 | T=0.53571427
| A=0.46428570 | A/T=0.50000000 T/T=0.28571430 A/A=0.21428572
| Pr(chiSq=0.000,df=1) =1.000 | Genotype Freq. |
ID-RA - PACIFIC | 34 | 34 | A=0.55882353
| T=0.44117647 | A/T=0.52941179 A/A=0.29411766 T/T=0.17647059
| Pr(chiSq=0.092,df=1) =1.000 | Genotype Freq. |
ID-SB - PACIFIC | 40 | 40 | A=0.57499999
| T=0.42500001 | A/T=0.44999999 A/A=0.34999999 T/T=0.20000000
| Pr(chiSq=0.126,df=1) =0.752 | Genotype Freq. |
ID-SO - PACIFIC | 38 | 38 | A=0.65789473
| T=0.34210527 | A/T=0.57894737 A/A=0.36842105 T/T=0.05263158
| Pr(chiSq=1.556,df=1) =0.251 | Genotype Freq. |
ID-SU - PACIFIC | 50 | 50 | T=0.62000000
| A=0.38000000 | A/T=0.51999998 T/T=0.36000001 A/A=0.12000000
| Pr(chiSq=0.268,df=1) =0.655 | Genotype Freq. |
ID-TB - PACIFIC | 40 | 40 | T=0.55000001
| A=0.44999999 | A/T=0.50000000 T/T=0.30000001 A/A=0.20000000
| Pr(chiSq=0.002,df=1) =1.000 | Genotype Freq. |
ID-TR - PACIFIC | 40 | 40 | A=0.60000002
| T=0.40000001 | A/T=0.40000001 A/A=0.40000001 T/T=0.20000000
| Pr(chiSq=0.556,df=1) =0.479 | Genotype Freq. |
IN-DR - CENTRAL ASIA | 46 | 46 | A=0.56521738
| T=0.43478259 | A/T=0.43478259 A/A=0.34782609 T/T=0.21739130
| Pr(chiSq=0.306,df=1) =0.584 | Genotype Freq. |
IN-EL - CENTRAL ASIA | 32 | 32 | T=0.75000000
| A=0.25000000 | T/T=0.62500000 A/T=0.25000000 A/A=0.12500000
| Pr(chiSq=1.778,df=1) =0.200 | Genotype Freq. |
IN-IL - CENTRAL ASIA | 26 | 26 | | A=0.50000000 | A/A=0.38461539 T/T=0.38461539 A/T=0.23076923
| Pr(chiSq=3.769,df=1) =0.100 | Genotype Freq. |
IN-NI - CENTRAL ASIA | 38 | 38 | | A=0.50000000 | A/T=0.47368422 A/A=0.26315790 T/T=0.26315790
| Pr(chiSq=0.053,df=1) =1.000 | Genotype Freq. |
IN-NL - CENTRAL ASIA | 26 | 26 | T=0.57692307
| A=0.42307693 | A/T=0.53846157 T/T=0.30769232 A/A=0.15384616
| Pr(chiSq=0.138,df=1) =0.752 | Genotype Freq. |
IN-SP - CENTRAL ASIA | 40 | 40 | T=0.52499998
| A=0.47499999 | A/T=0.55000001 T/T=0.25000000 A/A=0.20000000
| Pr(chiSq=0.211,df=1) =0.655 | Genotype Freq. |
IN-TB - CENTRAL ASIA | 40 | 40 | A=0.57499999
| T=0.42500001 | A/T=0.44999999 A/A=0.34999999 T/T=0.20000000
| Pr(chiSq=0.126,df=1) =0.752 | Genotype Freq. |
IN-WI - CENTRAL ASIA | 50 | 50 | A=0.57999998
| T=0.41999999 | A/T=0.60000002 A/A=0.28000000 T/T=0.12000000
| Pr(chiSq=1.340,df=1) =0.251 | Genotype Freq. |
IN-WL - CENTRAL ASIA | 28 | 28 | T=0.60714287
| A=0.39285713 | A/T=0.50000000 T/T=0.35714287 A/A=0.14285715
| Pr(chiSq=0.032,df=1) =1.000 | Genotype Freq. |
JP-ML - EAST ASIA | 142 | 142 | T=0.53521127
| A=0.46478873 | A/T=0.59154928 T/T=0.23943663 A/A=0.16901408
| Pr(chiSq=2.536,df=1) =0.150 | Genotype Freq. |
JP-RK - EAST ASIA | 92 | 92 | T=0.66304350
| A=0.33695653 | T/T=0.47826087 A/T=0.36956522 A/A=0.15217391
| Pr(chiSq=1.376,df=1) =0.251 | Genotype Freq. |
JPT - EAST ASIA | 88 | 88 | T=0.60227275
| A=0.39772728 | A/T=0.61363637 T/T=0.29545453 A/A=0.09090909
| Pr(chiSq=3.471,df=1) =0.100 | Genotype Freq. |
KR-KR - EAST ASIA | 180 | 180 | T=0.58333331
| A=0.41666666 | A/T=0.41111112 T/T=0.37777779 A/A=0.21111111
| Pr(chiSq=2.142,df=1) =0.150 | Genotype Freq. |
MY-BD - PACIFIC | 100 | 100 | T=0.64999998
| A=0.34999999 | A/T=0.46000001 T/T=0.41999999 A/A=0.12000000
| Pr(chiSq=0.006,df=1) =1.000 | Genotype Freq. |
MY-JH - PACIFIC | 100 | 100 | A=0.50999999
| T=0.49000001 | A/T=0.66000003 A/A=0.18000001 T/T=0.16000000
| Pr(chiSq=5.137,df=1) =0.025 | Genotype Freq. |
MY-KN - PACIFIC | 34 | 34 | T=0.52941179
| A=0.47058824 | A/T=0.47058824 T/T=0.29411766 A/A=0.23529412
| Pr(chiSq=0.052,df=1) =1.000 | Genotype Freq. |
MY-KS - PACIFIC | 60 | 60 | A=0.61666667
| T=0.38333333 | A/T=0.50000000 A/A=0.36666667 T/T=0.13333334
| Pr(chiSq=0.099,df=1) =1.000 | Genotype Freq. |
MY-MN - PACIFIC | 40 | 40 | T=0.64999998
| A=0.34999999 | A/T=0.50000000 T/T=0.40000001 A/A=0.10000000
| Pr(chiSq=0.196,df=1) =0.752 | Genotype Freq. |
MY-TM - PACIFIC | 96 | 96 | T=0.64583331
| A=0.35416666 | A/T=0.58333331 T/T=0.35416666 A/A=0.06250000
| Pr(chiSq=3.634,df=1) =0.100 | Genotype Freq. |
PI-AT - PACIFIC | 42 | 42 | A=0.85714287
| T=0.14285715 | A/A=0.76190478 A/T=0.19047619 T/T=0.04761905
| Pr(chiSq=1.037,df=1) =0.317 | Genotype Freq. |
PI-MA - PACIFIC | 36 | 36 | A=0.63888890
| T=0.36111110 | A/A=0.44444445 A/T=0.38888890 T/T=0.16666667
| Pr(chiSq=0.445,df=1) =0.527 | Genotype Freq. |
PI-MW - PACIFIC | 38 | 38 | | A=0.50000000 | A/T=0.36842105 A/A=0.31578946 T/T=0.31578946
| Pr(chiSq=1.316,df=1) =0.254 | Genotype Freq. |
PI-UB - PACIFIC | 40 | 40 | A=0.60000002
| T=0.40000001 | A/T=0.50000000 A/A=0.34999999 T/T=0.15000001
| Pr(chiSq=0.035,df=1) =1.000 | Genotype Freq. |
PI-UI - PACIFIC | 40 | 40 | T=0.52499998
| A=0.47499999 | A/T=0.75000000 T/T=0.15000001 A/A=0.10000000
| Pr(chiSq=5.075,df=1) =0.025 | Genotype Freq. |
PI-UN - PACIFIC | 38 | 38 | T=0.60526317
| A=0.39473686 | A/T=0.47368422 T/T=0.36842105 A/A=0.15789473
| Pr(chiSq=0.001,df=1) =1.000 | Genotype Freq. |
SG-CH - PACIFIC | 60 | 60 | A=0.60000002
| T=0.40000001 | A/T=0.46666667 A/A=0.36666667 T/T=0.16666667
| Pr(chiSq=0.023,df=1) =1.000 | Genotype Freq. |
SG-ID - PACIFIC | 60 | 60 | A=0.51666665
| T=0.48333332 | A/T=0.50000000 A/A=0.26666668 T/T=0.23333333
| Pr(chiSq=0.000,df=1) =1.000 | Genotype Freq. |
SG-ML - PACIFIC | 60 | 60 | A=0.51666665
| T=0.48333332 | A/T=0.50000000 A/A=0.26666668 T/T=0.23333333
| Pr(chiSq=0.000,df=1) =1.000 | Genotype Freq. |
TH-HM - PACIFIC | 40 | 40 | T=0.67500001
| A=0.32499999 | A/T=0.55000001 T/T=0.40000001 A/A=0.05000000
| Pr(chiSq=1.286,df=1) =0.273 | Genotype Freq. |
TH-KA - PACIFIC | 40 | 40 | A=0.52499998
| T=0.47499999 | A/T=0.34999999 A/A=0.34999999 T/T=0.30000001
| Pr(chiSq=1.779,df=1) =0.200 | Genotype Freq. |
TH-LW - PACIFIC | 38 | 38 | A=0.60526317
| T=0.39473686 | A/T=0.47368422 A/A=0.36842105 T/T=0.15789473
| Pr(chiSq=0.001,df=1) =1.000 | Genotype Freq. |
TH-MA - PACIFIC | 36 | 36 | T=0.83333331
| A=0.16666667 | T/T=0.72222221 A/T=0.22222222 A/A=0.05555556
| Pr(chiSq=0.720,df=1) =0.403 | Genotype Freq. |
TH-MO - PACIFIC | 38 | 38 | T=0.52631581
| A=0.47368422 | A/T=0.52631581 T/T=0.26315790 A/A=0.21052632
| Pr(chiSq=0.059,df=1) =1.000 | Genotype Freq. |
TH-PL - PACIFIC | 36 | 36 | T=0.61111110
| A=0.38888890 | A/T=0.66666669 T/T=0.27777779 A/A=0.05555556
| Pr(chiSq=2.918,df=1) =0.100 | Genotype Freq. |
TH-PP - PACIFIC | 36 | 36 | T=0.52777779
| A=0.47222221 | A/T=0.38888890 T/T=0.33333334 A/A=0.27777779
| Pr(chiSq=0.870,df=1) =0.371 | Genotype Freq. |
TH-TK - PACIFIC | 36 | 36 | T=0.80555558
| A=0.19444445 | T/T=0.61111110 A/T=0.38888890
| Pr(chiSq=0.368,df=1) =0.584 | Genotype Freq. |
TH-TL - PACIFIC | 40 | 40 | A=0.67500001
| T=0.32499999 | A/A=0.55000001 A/T=0.25000000 T/T=0.20000000
| Pr(chiSq=3.701,df=1) =0.100 | Genotype Freq. |
TH-TN - PACIFIC | 36 | 36 | T=0.55555558
| A=0.44444445 | A/T=0.44444445 T/T=0.33333334 A/A=0.22222222
| Pr(chiSq=0.180,df=1) =0.752 | Genotype Freq. |
TH-TU - PACIFIC | 40 | 40 | T=0.55000001
| A=0.44999999 | A/T=0.60000002 T/T=0.25000000 A/A=0.15000001
| Pr(chiSq=0.900,df=1) =0.371 | Genotype Freq. |
TH-TY - PACIFIC | 36 | 36 | T=0.69444442
| A=0.30555555 | T/T=0.50000000 A/T=0.38888890 A/A=0.11111111
| Pr(chiSq=0.126,df=1) =0.752 | Genotype Freq. |
TH-YA - PACIFIC | 38 | 38 | T=0.73684210
| A=0.26315790 | T/T=0.57894737 A/T=0.31578946 A/A=0.10526316
| Pr(chiSq=0.655,df=1) =0.439 | Genotype Freq. |
TW-HA - EAST ASIA | 96 | 96 | T=0.54166669
| A=0.45833334 | A/T=0.54166669 T/T=0.27083334 A/A=0.18750000
| Pr(chiSq=0.397,df=1) =0.584 | Genotype Freq. |
TW-HB - EAST ASIA | 64 | 64 | T=0.53125000
| A=0.46875000 | A/T=0.43750000 T/T=0.31250000 A/A=0.25000000
| Pr(chiSq=0.473,df=1) =0.527 | Genotype Freq. |
YRI - WEST AFRICA | 120 | 120 | T=0.94166666
| A=0.05833333 | T/T=0.88333333 A/T=0.11666667
| Pr(chiSq=0.026,df=1) =1.000 | Genotype Freq. |