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Submitted SNP(ss) Details: ss43987279           
Submitter
HandleABI
Submitter SNP IDhCV3192599
RefSNP(rs#)rs273884
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 75
Genotype Summarypopulation count: 79
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43987279|allelePos=301|len=601|taxid=9606|alleles='A/T'|mol=Genomic
 TTAAATAAGT AATTGATTAT TTTAATTAAA CTTATGTCGT TTGACTTCAT ACATCCTCGA
 ATACATAAAT CTAGAACACA CCTGCACATT CACACCAGTG ATTGACTGTA AATGCCAGGA
 TGTTCTTACA TTTCTGTTCA TTGAGATTCA GGGATAATGG TGCCTCAGAC TGATTGTATT
 CACATTGTTA ATTTGTAAAT TTGCCATTTT TGATGTAAGG ACGAGTGTAT TTTTGCTCAG
 AGATGAACAA CTTGCTATAT TAGACCAATT TTGGCCTTTG ACATCACATA GAAAATTTTG
 W
 ATTTCAAACA CATAATAGGT TTGAATTTTA GTGTTTCTTG GCAATAGTCT TAGCAACTCA
 GATGAGGTAT AAAACTATCC ATCTGGCTGT CCATTTTTAA AATGGTGGTA TGTGTTTTAA
 AGAGATACGA AAGTGCTGAT TATGTCAAGA TACTTAGTAC ATATTTTCCT CTTTCTCTGT
 GTGCACTTCT GTACTCTGGT TGGAATAGTC ATTGCTGTTG TTTTCATATA TGTTGTAAGT
 AGCACTTAAC AGTACTTCAT AATAGGAGTA TTCTCAAATA TGTCATTTTT TTCCCTAATT

  Submitted Frequency for ss43987279 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AX-AM
EAST ASIA
20A/T=0.40000001
A/A=0.30000001
T/T=0.30000001
PASNP_1PASNPI
PI-MW
PACIFIC
38A/T=0.36842099
A/A=0.31578901
T/T=0.31578901
PASNP_1PASNPI
ID-SB
PACIFIC
40A/T=0.44999999
A/A=0.34999999
T/T=0.20000000
PASNP_1PASNPI
ID-LE
PACIFIC
38A/A=0.57894701
A/T=0.42105299
T/T=0.00000000
PASNP_1PASNPI
PI-UN
PACIFIC
38A/T=0.47368401
T/T=0.36842099
A/A=0.15789500
PASNP_1PASNPI
SG-ML
PACIFIC
60A/T=0.50000000
A/A=0.26666701
T/T=0.23333301
PASNP_1PASNPI
ID-JA
PACIFIC
68A/T=0.50000000
A/A=0.26470599
T/T=0.23529400
PASNP_1PASNPI
PI-MA
PACIFIC
36A/A=0.44444400
A/T=0.38888901
T/T=0.16666700
PASNP_1PASNPI
ID-JV
PACIFIC
38A/T=0.47368401
A/A=0.26315799
T/T=0.26315799
PASNP_1PASNPI
PI-AT
PACIFIC
46A/A=0.69565201
A/T=0.17391300
N/N=0.08695700
T/T=0.04347800
PASNP_1PASNPI
SG-CH
PACIFIC
60A/T=0.46666700
A/A=0.36666700
T/T=0.16666700
PASNP_1PASNPI
TH-MA
PACIFIC
36T/T=0.72222197
A/T=0.22222200
A/A=0.05555600
PASNP_1PASNPI
JP-ML
EAST ASIA
142A/T=0.59154898
T/T=0.23943700
A/A=0.16901401
PASNP_1PASNPI
TH-TY
PACIFIC
36T/T=0.50000000
A/T=0.38888901
A/A=0.11111100
PASNP_1PASNPI
IN-WI
CENTRAL ASIA
50A/T=0.60000002
A/A=0.28000000
T/T=0.12000000
PASNP_1PASNPI
ID-ML
PACIFIC
24A/A=0.41666701
A/T=0.41666701
T/T=0.16666700
PASNP_1PASNPI
TH-YA
PACIFIC
38T/T=0.57894701
A/T=0.31578901
A/A=0.10526300
PASNP_1PASNPI
JP-RK
EAST ASIA
98T/T=0.44898000
A/T=0.34693900
A/A=0.14285700
N/N=0.06122400
PASNP_1PASNPI
TH-MO
PACIFIC
38A/T=0.52631599
T/T=0.26315799
A/A=0.21052600
PASNP_1PASNPI
ID-KR
PACIFIC
34A/A=0.35294101
A/T=0.35294101
T/T=0.29411799
PASNP_1PASNPI
TH-TN
PACIFIC
36A/T=0.44444400
T/T=0.33333299
A/A=0.22222200
PASNP_1PASNPI
SG-ID
PACIFIC
60A/T=0.50000000
A/A=0.26666701
T/T=0.23333301
PASNP_1PASNPI
MY-KN
PACIFIC
36A/T=0.44444400
T/T=0.27777800
A/A=0.22222200
N/N=0.05555600
PASNP_1PASNPI
TW-HA
EAST ASIA
96A/T=0.54166698
T/T=0.27083299
A/A=0.18750000
PASNP_1PASNPI
PI-UB
PACIFIC
40A/T=0.50000000
A/A=0.34999999
T/T=0.15000001
PASNP_1PASNPI
CN-UG
EAST ASIA
52T/T=0.53846198
A/T=0.34615400
A/A=0.11538500
PASNP_1PASNPI
MY-JH
PACIFIC
100A/T=0.66000003
A/A=0.18000001
T/T=0.16000000
PASNP_1PASNPI
CHB
EAST ASIA
90A/T=0.57777798
T/T=0.26666701
A/A=0.15555599
PASNP_1PASNPI
AX-ME
PACIFIC
10A/A=0.60000002
A/T=0.20000000
T/T=0.20000000
PASNP_1PASNPI
PI-AE
PACIFIC
16A/T=0.62500000
A/A=0.12500000
N/N=0.12500000
T/T=0.12500000
PASNP_1PASNPI
TH-TU
PACIFIC
40A/T=0.60000002
T/T=0.25000000
A/A=0.15000001
PASNP_1PASNPI
ID-SU
PACIFIC
50A/T=0.51999998
T/T=0.36000001
A/A=0.12000000
PASNP_1PASNPI
PI-IR
PACIFIC
18A/A=0.33333299
T/T=0.33333299
A/T=0.22222200
N/N=0.11111100
PASNP_1PASNPI
PI-AG
PACIFIC
16A/A=0.62500000
A/T=0.37500000
T/T=0.00000000
PASNP_1PASNPI
ID-AL
PACIFIC
38A/A=0.52631599
A/T=0.31578901
T/T=0.15789500
PASNP_1PASNPI
CN-WA
EAST ASIA
112T/T=0.51785702
A/T=0.37500000
A/A=0.10714300
PASNP_1PASNPI
CN-HM
EAST ASIA
52A/T=0.57692301
T/T=0.26923099
A/A=0.15384600
PASNP_1PASNPI
MY-MN
PACIFIC
40A/T=0.50000000
T/T=0.40000001
A/A=0.10000000
PASNP_1PASNPI
CEU
EUROPE
120T/T=0.48333299
A/T=0.41666701
A/A=0.10000000
PASNP_1PASNPI
TW-HB
EAST ASIA
64A/T=0.43750000
T/T=0.31250000
A/A=0.25000000
PASNP_1PASNPI
IN-WL
CENTRAL ASIA
28A/T=0.50000000
T/T=0.35714301
A/A=0.14285700
PASNP_1PASNPI
YRI
WEST AFRICA
120T/T=0.88333303
A/T=0.11666700
A/A=0.00000000
PASNP_1PASNPI
IN-TB
CENTRAL ASIA
46A/T=0.39130399
A/A=0.30434799
T/T=0.17391300
N/N=0.13043500
PASNP_1PASNPI
MY-BD
PACIFIC
100A/T=0.46000001
T/T=0.41999999
A/A=0.12000000
PASNP_1PASNPI
PI-UI
PACIFIC
40A/T=0.75000000
T/T=0.15000001
A/A=0.10000000
PASNP_1PASNPI
MY-KS
PACIFIC
60A/T=0.50000000
A/A=0.36666700
T/T=0.13333300
PASNP_1PASNPI
ID-SO
PACIFIC
38A/T=0.57894701
A/A=0.36842099
T/T=0.05263200
PASNP_1PASNPI
TH-TL
PACIFIC
40A/A=0.55000001
A/T=0.25000000
T/T=0.20000000
PASNP_1PASNPI
IN-IL
CENTRAL ASIA
30A/A=0.33333299
T/T=0.33333299
A/T=0.20000000
N/N=0.13333300
PASNP_1PASNPI
IN-EL
CENTRAL ASIA
32T/T=0.62500000
A/T=0.25000000
A/A=0.12500000
PASNP_1PASNPI
TH-PP
PACIFIC
36A/T=0.38888901
T/T=0.33333299
A/A=0.27777800
PASNP_1PASNPI
CN-SH
EAST ASIA
42A/T=0.38095200
T/T=0.38095200
A/A=0.23809500
PASNP_1PASNPI
CN-JN
EAST ASIA
58A/T=0.44827601
A/A=0.31034499
T/T=0.24137899
PASNP_1PASNPI
TH-KA
PACIFIC
40A/A=0.34999999
A/T=0.34999999
T/T=0.30000001
PASNP_1PASNPI
KR-KR
EAST ASIA
180A/T=0.41111100
T/T=0.37777799
A/A=0.21111099
PASNP_1PASNPI
CN-JI
EAST ASIA
62A/T=0.51612902
T/T=0.25806499
A/A=0.16129000
N/N=0.06451600
PASNP_1PASNPI
CN-GA
EAST ASIA
60A/T=0.46666700
T/T=0.43333301
A/A=0.10000000
PASNP_1PASNPI
ID-MT
PACIFIC
30A/T=0.46666700
T/T=0.26666701
A/A=0.20000000
N/N=0.06666700
PASNP_1PASNPI
IN-SP
CENTRAL ASIA
46A/T=0.47826099
T/T=0.21739100
A/A=0.17391300
N/N=0.13043500
PASNP_1PASNPI
ID-LA
PACIFIC
40A/A=0.60000002
A/T=0.25000000
T/T=0.15000001
PASNP_1PASNPI
IN-DR
CENTRAL ASIA
48A/T=0.41666701
A/A=0.33333299
T/T=0.20833300
N/N=0.04166700
PASNP_1PASNPI
ID-DY
PACIFIC
24A/T=0.50000000
A/A=0.33333299
T/T=0.16666700
PASNP_1PASNPI
MY-TM
PACIFIC
98A/T=0.57142901
T/T=0.34693900
A/A=0.06122400
N/N=0.02040800
PASNP_1PASNPI
ID-RA
PACIFIC
34A/T=0.52941197
A/A=0.29411799
T/T=0.17647099
PASNP_1PASNPI
TH-PL
PACIFIC
36A/T=0.66666698
T/T=0.27777800
A/A=0.05555600
PASNP_1PASNPI
JPT
EAST ASIA
88A/T=0.61363602
T/T=0.29545501
A/A=0.09090900
PASNP_1PASNPI
IN-NI
CENTRAL ASIA
40A/T=0.44999999
A/A=0.25000000
T/T=0.25000000
N/N=0.05000000
PASNP_1PASNPI
CN-CC
EAST ASIA
52A/T=0.50000000
T/T=0.34615400
A/A=0.15384600
PASNP_1PASNPI
TH-LW
PACIFIC
38A/T=0.47368401
A/A=0.36842099
T/T=0.15789500
PASNP_1PASNPI
ID-TR
PACIFIC
40A/A=0.40000001
A/T=0.40000001
T/T=0.20000000
PASNP_1PASNPI
IN-NL
CENTRAL ASIA
30A/T=0.46666700
T/T=0.26666701
A/A=0.13333300
N/N=0.13333300
PASNP_1PASNPI
TH-TK
PACIFIC
36T/T=0.61111099
A/T=0.38888901
A/A=0.00000000
PASNP_1PASNPI
TH-HM
PACIFIC
40A/T=0.55000001
T/T=0.40000001
A/A=0.05000000
PASNP_1PASNPI
ID-TB
PACIFIC
40A/T=0.50000000
T/T=0.30000001
A/A=0.20000000
PASNP_1PASNPI
AX-AT
EAST ASIA
20A/T=0.50000000
T/T=0.40000001
A/A=0.10000000
PASNP_1PASNPI


  dbSNP summary of Genotypes for ss43987279 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.69166666
T=0.30833334A/A=0.48333332
A/T=0.41666666
T/T=0.10000000
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.55555558
T=0.44444445A/T=0.57777780
A/A=0.26666668
T/T=0.15555556
Pr(chiSq=1.300,df=1)
=0.254
Genotype
Freq.
HapMap-JPT8888A=0.60227275
T=0.39772728A/T=0.61363637
A/A=0.29545453
T/T=0.09090909
Pr(chiSq=3.471,df=1)
=0.100
Genotype
Freq.
HapMap-YRI120120A=0.94166666
T=0.05833333A/A=0.88333333
A/T=0.11666667
Pr(chiSq=0.026,df=1)
=1.000
Genotype
Freq.
AX-AM
EAST ASIA
2020A=0.50000000A/T=0.40000001
A/A=0.30000001
T/T=0.30000001
Pr(chiSq=0.400,df=1)
=0.584
Genotype
Freq.
AX-AT
EAST ASIA
2020T=0.64999998
A=0.34999999A/T=0.50000000
T/T=0.40000001
A/A=0.10000000
Pr(chiSq=0.098,df=1)
=1.000
Genotype
Freq.
CEU
EUROPE
120120T=0.69166666
A=0.30833334T/T=0.48333332
A/T=0.41666666
A/A=0.10000000
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.
CHB
EAST ASIA
9090T=0.55555558
A=0.44444445A/T=0.57777780
T/T=0.26666668
A/A=0.15555556
Pr(chiSq=1.300,df=1)
=0.254
Genotype
Freq.
CN-CC
EAST ASIA
5252T=0.59615386
A=0.40384614A/T=0.50000000
T/T=0.34615386
A/A=0.15384616
Pr(chiSq=0.038,df=1)
=1.000
Genotype
Freq.
CN-GA
EAST ASIA
6060T=0.66666669
A=0.33333334A/T=0.46666667
T/T=0.43333334
A/A=0.10000000
Pr(chiSq=0.075,df=1)
=1.000
Genotype
Freq.
CN-HM
EAST ASIA
5252T=0.55769229
A=0.44230768A/T=0.57692307
T/T=0.26923078
A/A=0.15384616
Pr(chiSq=0.746,df=1)
=0.403
Genotype
Freq.
CN-JI
EAST ASIA
5858T=0.55172414
A=0.44827586A/T=0.55172414
T/T=0.27586207
A/A=0.17241380
Pr(chiSq=0.386,df=1)
=0.584
Genotype
Freq.
CN-JN
EAST ASIA
5858A=0.53448278
T=0.46551725A/T=0.44827586
A/A=0.31034482
T/T=0.24137931
Pr(chiSq=0.285,df=1)
=0.655
Genotype
Freq.
CN-SH
EAST ASIA
4242T=0.57142860
A=0.42857143A/T=0.38095239
T/T=0.38095239
A/A=0.23809524
Pr(chiSq=1.037,df=1)
=0.317
Genotype
Freq.
CN-UG
EAST ASIA
5252T=0.71153843
A=0.28846154T/T=0.53846157
A/T=0.34615386
A/A=0.11538462
Pr(chiSq=0.639,df=1)
=0.439
Genotype
Freq.
CN-WA
EAST ASIA
112112T=0.70535713
A=0.29464287T/T=0.51785713
A/T=0.37500000
A/A=0.10714286
Pr(chiSq=0.536,df=1)
=0.479
Genotype
Freq.
ID-AL
PACIFIC
3838A=0.68421054
T=0.31578946A/A=0.52631581
A/T=0.31578946
T/T=0.15789473
Pr(chiSq=1.377,df=1)
=0.251
Genotype
Freq.
ID-DY
PACIFIC
2424A=0.58333331
T=0.41666666A/T=0.50000000
A/A=0.33333334
T/T=0.16666667
Pr(chiSq=0.010,df=1)
=1.000
Genotype
Freq.
ID-JA
PACIFIC
6868A=0.51470590
T=0.48529410A/T=0.50000000
A/A=0.26470590
T/T=0.23529412
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
ID-JV
PACIFIC
3838A=0.50000000A/T=0.47368422
A/A=0.26315790
T/T=0.26315790
Pr(chiSq=0.053,df=1)
=1.000
Genotype
Freq.
ID-KR
PACIFIC
3434A=0.52941179
T=0.47058824A/T=0.35294119
A/A=0.35294119
T/T=0.29411766
Pr(chiSq=1.446,df=1)
=0.251
Genotype
Freq.
ID-LA
PACIFIC
4040A=0.72500002
T=0.27500001A/A=0.60000002
A/T=0.25000000
T/T=0.15000001
Pr(chiSq=2.783,df=1)
=0.100
Genotype
Freq.
ID-LE
PACIFIC
3838A=0.78947371
T=0.21052632A/A=0.57894737
A/T=0.42105263
Pr(chiSq=0.509,df=1)
=0.479
Genotype
Freq.
ID-ML
PACIFIC
2424A=0.62500000
T=0.37500000A/T=0.41666666
A/A=0.41666666
T/T=0.16666667
Pr(chiSq=0.148,df=1)
=0.752
Genotype
Freq.
ID-MT
PACIFIC
2828T=0.53571427
A=0.46428570A/T=0.50000000
T/T=0.28571430
A/A=0.21428572
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
ID-RA
PACIFIC
3434A=0.55882353
T=0.44117647A/T=0.52941179
A/A=0.29411766
T/T=0.17647059
Pr(chiSq=0.092,df=1)
=1.000
Genotype
Freq.
ID-SB
PACIFIC
4040A=0.57499999
T=0.42500001A/T=0.44999999
A/A=0.34999999
T/T=0.20000000
Pr(chiSq=0.126,df=1)
=0.752
Genotype
Freq.
ID-SO
PACIFIC
3838A=0.65789473
T=0.34210527A/T=0.57894737
A/A=0.36842105
T/T=0.05263158
Pr(chiSq=1.556,df=1)
=0.251
Genotype
Freq.
ID-SU
PACIFIC
5050T=0.62000000
A=0.38000000A/T=0.51999998
T/T=0.36000001
A/A=0.12000000
Pr(chiSq=0.268,df=1)
=0.655
Genotype
Freq.
ID-TB
PACIFIC
4040T=0.55000001
A=0.44999999A/T=0.50000000
T/T=0.30000001
A/A=0.20000000
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.
ID-TR
PACIFIC
4040A=0.60000002
T=0.40000001A/T=0.40000001
A/A=0.40000001
T/T=0.20000000
Pr(chiSq=0.556,df=1)
=0.479
Genotype
Freq.
IN-DR
CENTRAL ASIA
4646A=0.56521738
T=0.43478259A/T=0.43478259
A/A=0.34782609
T/T=0.21739130
Pr(chiSq=0.306,df=1)
=0.584
Genotype
Freq.
IN-EL
CENTRAL ASIA
3232T=0.75000000
A=0.25000000T/T=0.62500000
A/T=0.25000000
A/A=0.12500000
Pr(chiSq=1.778,df=1)
=0.200
Genotype
Freq.
IN-IL
CENTRAL ASIA
2626A=0.50000000A/A=0.38461539
T/T=0.38461539
A/T=0.23076923
Pr(chiSq=3.769,df=1)
=0.100
Genotype
Freq.
IN-NI
CENTRAL ASIA
3838A=0.50000000A/T=0.47368422
A/A=0.26315790
T/T=0.26315790
Pr(chiSq=0.053,df=1)
=1.000
Genotype
Freq.
IN-NL
CENTRAL ASIA
2626T=0.57692307
A=0.42307693A/T=0.53846157
T/T=0.30769232
A/A=0.15384616
Pr(chiSq=0.138,df=1)
=0.752
Genotype
Freq.
IN-SP
CENTRAL ASIA
4040T=0.52499998
A=0.47499999A/T=0.55000001
T/T=0.25000000
A/A=0.20000000
Pr(chiSq=0.211,df=1)
=0.655
Genotype
Freq.
IN-TB
CENTRAL ASIA
4040A=0.57499999
T=0.42500001A/T=0.44999999
A/A=0.34999999
T/T=0.20000000
Pr(chiSq=0.126,df=1)
=0.752
Genotype
Freq.
IN-WI
CENTRAL ASIA
5050A=0.57999998
T=0.41999999A/T=0.60000002
A/A=0.28000000
T/T=0.12000000
Pr(chiSq=1.340,df=1)
=0.251
Genotype
Freq.
IN-WL
CENTRAL ASIA
2828T=0.60714287
A=0.39285713A/T=0.50000000
T/T=0.35714287
A/A=0.14285715
Pr(chiSq=0.032,df=1)
=1.000
Genotype
Freq.
JP-ML
EAST ASIA
142142T=0.53521127
A=0.46478873A/T=0.59154928
T/T=0.23943663
A/A=0.16901408
Pr(chiSq=2.536,df=1)
=0.150
Genotype
Freq.
JP-RK
EAST ASIA
9292T=0.66304350
A=0.33695653T/T=0.47826087
A/T=0.36956522
A/A=0.15217391
Pr(chiSq=1.376,df=1)
=0.251
Genotype
Freq.
JPT
EAST ASIA
8888T=0.60227275
A=0.39772728A/T=0.61363637
T/T=0.29545453
A/A=0.09090909
Pr(chiSq=3.471,df=1)
=0.100
Genotype
Freq.
KR-KR
EAST ASIA
180180T=0.58333331
A=0.41666666A/T=0.41111112
T/T=0.37777779
A/A=0.21111111
Pr(chiSq=2.142,df=1)
=0.150
Genotype
Freq.
MY-BD
PACIFIC
100100T=0.64999998
A=0.34999999A/T=0.46000001
T/T=0.41999999
A/A=0.12000000
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.
MY-JH
PACIFIC
100100A=0.50999999
T=0.49000001A/T=0.66000003
A/A=0.18000001
T/T=0.16000000
Pr(chiSq=5.137,df=1)
=0.025
Genotype
Freq.
MY-KN
PACIFIC
3434T=0.52941179
A=0.47058824A/T=0.47058824
T/T=0.29411766
A/A=0.23529412
Pr(chiSq=0.052,df=1)
=1.000
Genotype
Freq.
MY-KS
PACIFIC
6060A=0.61666667
T=0.38333333A/T=0.50000000
A/A=0.36666667
T/T=0.13333334
Pr(chiSq=0.099,df=1)
=1.000
Genotype
Freq.
MY-MN
PACIFIC
4040T=0.64999998
A=0.34999999A/T=0.50000000
T/T=0.40000001
A/A=0.10000000
Pr(chiSq=0.196,df=1)
=0.752
Genotype
Freq.
MY-TM
PACIFIC
9696T=0.64583331
A=0.35416666A/T=0.58333331
T/T=0.35416666
A/A=0.06250000
Pr(chiSq=3.634,df=1)
=0.100
Genotype
Freq.
PI-AT
PACIFIC
4242A=0.85714287
T=0.14285715A/A=0.76190478
A/T=0.19047619
T/T=0.04761905
Pr(chiSq=1.037,df=1)
=0.317
Genotype
Freq.
PI-MA
PACIFIC
3636A=0.63888890
T=0.36111110A/A=0.44444445
A/T=0.38888890
T/T=0.16666667
Pr(chiSq=0.445,df=1)
=0.527
Genotype
Freq.
PI-MW
PACIFIC
3838A=0.50000000A/T=0.36842105
A/A=0.31578946
T/T=0.31578946
Pr(chiSq=1.316,df=1)
=0.254
Genotype
Freq.
PI-UB
PACIFIC
4040A=0.60000002
T=0.40000001A/T=0.50000000
A/A=0.34999999
T/T=0.15000001
Pr(chiSq=0.035,df=1)
=1.000
Genotype
Freq.
PI-UI
PACIFIC
4040T=0.52499998
A=0.47499999A/T=0.75000000
T/T=0.15000001
A/A=0.10000000
Pr(chiSq=5.075,df=1)
=0.025
Genotype
Freq.
PI-UN
PACIFIC
3838T=0.60526317
A=0.39473686A/T=0.47368422
T/T=0.36842105
A/A=0.15789473
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
SG-CH
PACIFIC
6060A=0.60000002
T=0.40000001A/T=0.46666667
A/A=0.36666667
T/T=0.16666667
Pr(chiSq=0.023,df=1)
=1.000
Genotype
Freq.
SG-ID
PACIFIC
6060A=0.51666665
T=0.48333332A/T=0.50000000
A/A=0.26666668
T/T=0.23333333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
SG-ML
PACIFIC
6060A=0.51666665
T=0.48333332A/T=0.50000000
A/A=0.26666668
T/T=0.23333333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
TH-HM
PACIFIC
4040T=0.67500001
A=0.32499999A/T=0.55000001
T/T=0.40000001
A/A=0.05000000
Pr(chiSq=1.286,df=1)
=0.273
Genotype
Freq.
TH-KA
PACIFIC
4040A=0.52499998
T=0.47499999A/T=0.34999999
A/A=0.34999999
T/T=0.30000001
Pr(chiSq=1.779,df=1)
=0.200
Genotype
Freq.
TH-LW
PACIFIC
3838A=0.60526317
T=0.39473686A/T=0.47368422
A/A=0.36842105
T/T=0.15789473
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
TH-MA
PACIFIC
3636T=0.83333331
A=0.16666667T/T=0.72222221
A/T=0.22222222
A/A=0.05555556
Pr(chiSq=0.720,df=1)
=0.403
Genotype
Freq.
TH-MO
PACIFIC
3838T=0.52631581
A=0.47368422A/T=0.52631581
T/T=0.26315790
A/A=0.21052632
Pr(chiSq=0.059,df=1)
=1.000
Genotype
Freq.
TH-PL
PACIFIC
3636T=0.61111110
A=0.38888890A/T=0.66666669
T/T=0.27777779
A/A=0.05555556
Pr(chiSq=2.918,df=1)
=0.100
Genotype
Freq.
TH-PP
PACIFIC
3636T=0.52777779
A=0.47222221A/T=0.38888890
T/T=0.33333334
A/A=0.27777779
Pr(chiSq=0.870,df=1)
=0.371
Genotype
Freq.
TH-TK
PACIFIC
3636T=0.80555558
A=0.19444445T/T=0.61111110
A/T=0.38888890
Pr(chiSq=0.368,df=1)
=0.584
Genotype
Freq.
TH-TL
PACIFIC
4040A=0.67500001
T=0.32499999A/A=0.55000001
A/T=0.25000000
T/T=0.20000000
Pr(chiSq=3.701,df=1)
=0.100
Genotype
Freq.
TH-TN
PACIFIC
3636T=0.55555558
A=0.44444445A/T=0.44444445
T/T=0.33333334
A/A=0.22222222
Pr(chiSq=0.180,df=1)
=0.752
Genotype
Freq.
TH-TU
PACIFIC
4040T=0.55000001
A=0.44999999A/T=0.60000002
T/T=0.25000000
A/A=0.15000001
Pr(chiSq=0.900,df=1)
=0.371
Genotype
Freq.
TH-TY
PACIFIC
3636T=0.69444442
A=0.30555555T/T=0.50000000
A/T=0.38888890
A/A=0.11111111
Pr(chiSq=0.126,df=1)
=0.752
Genotype
Freq.
TH-YA
PACIFIC
3838T=0.73684210
A=0.26315790T/T=0.57894737
A/T=0.31578946
A/A=0.10526316
Pr(chiSq=0.655,df=1)
=0.439
Genotype
Freq.
TW-HA
EAST ASIA
9696T=0.54166669
A=0.45833334A/T=0.54166669
T/T=0.27083334
A/A=0.18750000
Pr(chiSq=0.397,df=1)
=0.584
Genotype
Freq.
TW-HB
EAST ASIA
6464T=0.53125000
A=0.46875000A/T=0.43750000
T/T=0.31250000
A/A=0.25000000
Pr(chiSq=0.473,df=1)
=0.527
Genotype
Freq.
YRI
WEST AFRICA
120120T=0.94166666
A=0.05833333T/T=0.88333333
A/T=0.11666667
Pr(chiSq=0.026,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss43987279 back to top
There is no individual genotype data for ss43987279.

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