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Submitted SNP(ss) Details: ss43990115           
Submitter
HandleABI
Submitter SNP IDhCV2709821
RefSNP(rs#)rs2840531
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 14
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43990115|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 GCCCCCTTGT CTGCCTTCAC CTCAGTTGAT AGAAGCAGTT CCACACCGCA TAGGTGGAAT
 AGCTCTCATA TTTCTGCATA AAAATACTTA CTGGGCGCCA TGCCTTCTAC TTGGAGAGAT
 TTTCAGAGCC AAAGTCTCGA TTGAAACCAG CCTCGTGCCT GCATCGCACC CTACCCCGCG
 CGGGCCCCCC GCGCCGGCCC CACTGCCTGA GTCTGGGGCG GATCCTACCT GGGGGGCCTC
 CCCCGACTCT CAGCCCGGCT CAGGCTGTTT CTGGCTTGAC GATGATGTGA GTGTCCAGCC
 R
 TAAATTCTCC AGCACAAAAG ATATTTCCCT TGGGAAACCT AGAGGAACGT GCTTTTGTTT
 TTGTAAGACC CGCTGGGGCT TGAACCACAG ACATTTGGAG TTGGGTGCCG AGCTCTGCCT
 GGGCCTCACG GGTGCATCCG ACACCAACCC TGGGAGGCTG GGCTGCTGCT TTCACTCTGA
 TGTGAAGCTA AACCTCTCTG TGCCTCAGTT TCCTCATCCA TAAAGGGAGG GCAACAGCAG
 CGTCCACCCC AAGGACGGAT GACTGAGTGC GCATGCTGGC CTCCACCCAG GCCTGTGCAG

  Submitted Frequency for ss43990115 back to top
There is no frequency submission for ss43990115.


  dbSNP summary of Genotypes for ss43990115 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.76548672
A=0.23451327G/G=0.57522124
A/G=0.38053098
A/A=0.04424779
Pr(chiSq=0.405,df=1)
=0.527
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.67441863
A=0.32558140G/G=0.48837209
A/G=0.37209302
A/A=0.13953489
Pr(chiSq=1.003,df=1)
=0.317
Genotype
Freq.
HapMap-JPT172172G=0.77906978
A=0.22093023G/G=0.60465115
A/G=0.34883720
A/A=0.04651163
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.
HapMap-YRI224224G=0.95982140
A=0.04017857G/G=0.91964287
A/G=0.08035714
Pr(chiSq=0.015,df=1)
=1.000
Genotype
Freq.
HAPMAP-ASW9898G=0.95918369
A=0.04081633G/G=0.91836733
A/G=0.08163265
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282G=0.85365856
A=0.14634146G/G=0.70731705
A/G=0.29268292
Pr(chiSq=0.327,df=1)
=0.584
Genotype
Freq.
HAPMAP-CHD170170G=0.78823531
A=0.21176471G/G=0.63529414
A/G=0.30588236
A/A=0.05882353
Pr(chiSq=0.596,df=1)
=0.479
Genotype
Freq.
HAPMAP-GIH176176G=0.84090906
A=0.15909091G/G=0.71590906
A/G=0.25000000
A/A=0.03409091
Pr(chiSq=0.379,df=1)
=0.584
Genotype
Freq.
HAPMAP-LWK180180G=0.96666664
A=0.03333334G/G=0.93333334
A/G=0.06666667
Pr(chiSq=0.007,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100G=0.52999997
A=0.47000000A/G=0.41999999
G/G=0.31999999
A/A=0.25999999
Pr(chiSq=1.232,df=1)
=0.273
Genotype
Freq.
HAPMAP-MKK286286G=0.98951048
A=0.01048951G/G=0.97902095
A/G=0.02097902
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI176176G=0.90340906
A=0.09659091G/G=0.80681819
A/G=0.19318181
Pr(chiSq=0.185,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss43990115 back to top
There is no individual genotype data for ss43990115.