NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss44004860           
Submitter
HandleABI
Submitter SNP IDhCV11610809
RefSNP(rs#)rs11807848
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44004860|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 CCTGACTGTG ACGGACAGCA GTGTGTTTGG TGTCTCCTGT GCCTGCGGAG CGGTTCTGGA
 GTCTGTCTAT GGAGTCTGCT TGTTTGAAGG CTGCTGTGAC TTTCTTATAT TTATCAGCAA
 ATTTTGGGGA TTTTTTTCCA GCGGGCGAAT GGCCCAGGGC TGGAAGCAGG GTCCGTGCTC
 CCCCGAGCTG CTCTCCTGGG CTTCTTGAGG GCTCAGCTCT CCGGAACGAG GTGGATTGAG
 GATGGGTCCC CTCCAAGTAC ACTCCACCCC AGGCCCAGCA CGAAGGGTAC AGAGGGCGAA
 R
 GTCTGGATGG GATACCCCAG CCTGGGAATC TGTGCTTGCC TGGGACTCTC AGCAGGAGGT
 TGGAAGAGGA CGGAGGACCC AGGACTCTTT CTGCACAGGG CCTGGGCCAT CCACTCTTTG
 CCCTGGGGTA ACTTGAGGGC CTGTGGAGGA AACATCTTTC CTGGAATCCT GGCCTGAGAG
 GATGCTAAGG GTTAACCCCT GAGGCTGACC CCAAGGGCGT CCATTCCTGC ATAAAAGGCC
 CAGCTCAGCC AGCCCCATCG GCCACCTCTG TCAGGGGAAG AGTGTAGCTC AGGTGAGGTG

  Submitted Frequency for ss44004860 back to top
There is no frequency submission for ss44004860.


  dbSNP summary of Genotypes for ss44004860 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.61061949
G=0.38938054A/G=0.47787610
A/A=0.37168142
G/G=0.15044248
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.72093022
G=0.27906978A/A=0.53488374
A/G=0.37209302
G/G=0.09302326
Pr(chiSq=0.244,df=1)
=0.655
Genotype
Freq.
HapMap-JPT172172A=0.76162791
G=0.23837209A/A=0.56976742
A/G=0.38372093
G/G=0.04651163
Pr(chiSq=0.277,df=1)
=0.655
Genotype
Freq.
HapMap-YRI226226A=0.65486723
G=0.34513274A/A=0.45132744
A/G=0.40707964
G/G=0.14159292
Pr(chiSq=1.118,df=1)
=0.294
Genotype
Freq.
HAPMAP-ASW9898A=0.64285713
G=0.35714287A/A=0.44897959
A/G=0.38775510
G/G=0.16326530
Pr(chiSq=1.186,df=1)
=0.294
Genotype
Freq.
HAPMAP-CHB8282A=0.67073172
G=0.32926831A/A=0.46341464
A/G=0.41463414
G/G=0.12195122
Pr(chiSq=0.154,df=1)
=0.752
Genotype
Freq.
HAPMAP-CHD170170A=0.81176472
G=0.18823530A/A=0.67058825
A/G=0.28235295
G/G=0.04705882
Pr(chiSq=0.492,df=1)
=0.527
Genotype
Freq.
HAPMAP-GIH176176A=0.67613637
G=0.32386363A/A=0.45454547
A/G=0.44318181
G/G=0.10227273
Pr(chiSq=0.013,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK180180A=0.67222220
G=0.32777777A/A=0.45555556
A/G=0.43333334
G/G=0.11111111
Pr(chiSq=0.025,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100A=0.63000000
G=0.37000000A/G=0.46000001
A/A=0.40000001
G/G=0.14000000
Pr(chiSq=0.009,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286A=0.69230771
G=0.30769232A/A=0.48951048
A/G=0.40559441
G/G=0.10489511
Pr(chiSq=0.329,df=1)
=0.584
Genotype
Freq.
HAPMAP-TSI176176A=0.51704544
G=0.48295453A/G=0.53409094
A/A=0.25000000
G/G=0.21590909
Pr(chiSq=0.424,df=1)
=0.527
Genotype
Freq.

  Submitted individual genotype for ss44004860 back to top
There is no individual genotype data for ss44004860.