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Submitted SNP(ss) Details: ss44072045           
Submitter
HandleABI
Submitter SNP IDhCV575935
RefSNP(rs#)rs323951
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44072045|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 GGCCACACTT CTAAGATGTC CAGGTTCAAC TGCACCATTA CTTTGATTCC TACCCCGCAA
 AACATCAGCT ACTGTGTTCC TCAAACTTGT TTACAAAATG AACTATAAAT ATTACATAAT
 GCCTTTTAGT TAAAGAAAAT TAAAACAACG GAAGGAGGAA ATTTTCTGCA GGGACTTTCT
 TGTAACCCCT TGGAAGAAAA CATTCTCTCT TCCTCTTTCT GTCTTGCTCA TGGCTTTCTC
 ACACCCAAAA ATCAGGTTTG AGTAAATACT TTTCTTCTTA CAATTTCTTG CACTATCAAT
 R
 TGCTCTTTTT CTAGTTCTTG GATTGTCTAT TTATTGATTT TTTTTTCTCT TTTCTGAGTG
 AAAATGCTGA ATGCAGTTCC TCTAGAAAAA AATGCTTAAC TTTCTGTCAA CCTTCTGGTT
 TCCTTAGAGG ATTTGGTACA ACATAGAAAT GTGATTGGCG ATGTCTATTC TCAGGGGCCT
 GCCTCTCCTT TTGAAATAAA CAATGGGTTA GGCAGTCCCC TGAAGTATAC AGGTACCACT
 GAAGGCTATT ATTCTGAATA ATCTGCTCTG GCACAGGAAC ATTTATGCAA GGTGTTGAAT

  Submitted Frequency for ss44072045 back to top
There is no frequency submission for ss44072045.


  dbSNP summary of Genotypes for ss44072045 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU220220A=0.99545455
G=0.00454545A/A=0.99090910
A/G=0.00909091
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI224224A=0.70535713
G=0.29464287A/A=0.47321430
A/G=0.46428570
G/G=0.06250000
Pr(chiSq=1.533,df=1)
=0.251
Genotype
Freq.
HAPMAP-ASW9696A=0.70833331
G=0.29166666A/A=0.50000000
A/G=0.41666666
G/G=0.08333334
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK178178A=0.78651685
G=0.21348314A/A=0.60674155
A/G=0.35955057
G/G=0.03370786
Pr(chiSq=0.445,df=1)
=0.527
Genotype
Freq.
HAPMAP-MEX9898A=0.96938777
G=0.03061225A/A=0.93877554
A/G=0.06122449
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286A=0.90559441
G=0.09440559A/A=0.81118882
A/G=0.18881118
Pr(chiSq=0.280,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss44072045 back to top
There is no individual genotype data for ss44072045.

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