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Submitted SNP(ss) Details: ss44096232           
Submitter
HandleABI
Submitter SNP IDhCV25764774
RefSNP(rs#)rs3926124
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44096232|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 GGGGTTAATC TAAGCATTTT GCAGTATCCT TAGGGATGTA GGGAGATACT GGTTGGGCCT
 GGATTGTCCC ATTTGCCTGG GGAGGGTGGG ATGCTGGGTG GGCTCTCCTT GCCTGCTTAC
 TTTCGTCCTG CCTTTCCCCT GCCCAGGGGT GTGGGGTACG GATACAGAGG AGCGGCTGGT
 GGAGCATCTC CTGGATCCTT CCCGCTACAA CAAGCTTATC CGCCCAGCCA CCAATGGCTC
 TGAGCTGGTG ACAGTACAGC TTATGGTGTC ACTGGCCCAG CTCATCAGTG TGGTGAGTAG
 R
 GGTCCCAGGC TCTCTGCCCA GCTACTGAAA TCAGCCCCGC CAAAATGTGT TAATGCTTGT
 GTGCTTCCTC CCCTGGTGTT TCCAAGGCTT GGGGAGGTGT GAGAGGGACC CTGGGTGGTG
 GCAGTGACCC CACAGGCTTA GGGGCCTTCT CGGCAGCCTC TCTTCCTCCC TGCAGCATGA
 GCGGGAGCAG ATCATGACCA CCAATGTCTG GCTGACCCAG GTAAGCGTAA GTGCTCTCTT
 CCACCCACAC CCCTGGCCTT CTCTCTCCTC CTTTTTCCCC ATGTGCTTTT TTCTTTCTTA

  Submitted Frequency for ss44096232 back to top
There is no frequency submission for ss44096232.


  dbSNP summary of Genotypes for ss44096232 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-YRI226226A=0.55309737
G=0.44690266A/G=0.39823008
A/A=0.35398230
G/G=0.24778761
Pr(chiSq=4.273,df=1)
=0.050
Genotype
Freq.
HAPMAP-ASW9898A=0.52040815
G=0.47959185A/G=0.46938777
A/A=0.28571430
G/G=0.24489796
Pr(chiSq=0.174,df=1)
=0.752
Genotype
Freq.
HAPMAP-LWK180180A=0.61666667
G=0.38333333A/G=0.50000000
A/A=0.36666667
G/G=0.13333334
Pr(chiSq=0.298,df=1)
=0.655
Genotype
Freq.
HAPMAP-MEX100100A=0.98000002
G=0.02000000A/A=0.95999998
A/G=0.04000000
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286A=0.71678323
G=0.28321677A/A=0.54545456
A/G=0.34265736
G/G=0.11188811
Pr(chiSq=3.482,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss44096232 back to top
There is no individual genotype data for ss44096232.

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