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Submitted SNP(ss) Details: ss44096708           
Submitter
HandleABI
Submitter SNP IDhCV462177
RefSNP(rs#)rs12025301
Submitted Batch IDxplore_hum_chr1_1
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44096708|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 CTTCTACCCC ATTAGTGATA CCTTTTCTAT TGTCTTTTAT TCTTTTTTTT TTTAAATTTA
 CCAAATACCC AGACTTCAAA GAGATATCTT TTTTTCTTTA GAGGAAATAC AGCTATTTTC
 CCAACCCACT CCTTCCCCAA CACATTCTCA GAAACTTCTG GCTTGTGACC TTCCATTCGT
 GTTTTAGAGT CCAGCCTCTG GTTCTCTGTA ACTATAGGAG CAGATGTTGA AATCAGCCAC
 AGTGTTTTAT ATTCAGCTCC CATCCTCTCC TCTCAAAGTA CATACAAATG TGGGCCCCTC
 R
 AAGAAGCCAC CTTTATATGC AGTCATAGAC TATAAATTCT TTGTGAGATT ACTTCTCAGC
 AAAAGAGAGA CATGAAATGT CTACCAGCCA GCATTCCCAA ATGAATCTTG ACTTTTAATC
 CCACAAGATC TTTCAAACTG AGGTGAATTT CTTTGCAGTG AGACTTTGCA AATCCACAAA
 AAGTATTTCC TTTTAAGATG CCCATTCCTG AGGTTTTTGA GCTAAGGAAA ACTGACTAGG
 CTTGGCAAGT GCAGAATTTG TGATTCTAGT GGTCTGCATT TTGGGTCCCA GACTTTTAAT

  Submitted Frequency for ss44096708 back to top
There is no frequency submission for ss44096708.


  dbSNP summary of Genotypes for ss44096708 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.89999998
G=0.10000000A/A=0.80000001
A/G=0.20000000
Pr(chiSq=0.141,df=1)
=0.752
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090A=0.77777779
G=0.22222222A/A=0.60000002
A/G=0.35555556
G/G=0.04444445
Pr(chiSq=0.037,df=1)
=1.000
Genotype
Freq.
HapMap-JPT9090A=0.81111109
G=0.18888889A/A=0.68888891
A/G=0.24444444
G/G=0.06666667
Pr(chiSq=1.841,df=1)
=0.200
Genotype
Freq.
HapMap-YRI118118A=0.97457629
G=0.02542373A/A=0.94915253
A/G=0.05084746
Pr(chiSq=0.002,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss44096708 back to top
There is no individual genotype data for ss44096708.