Submitted SNP(ss) Details: ss44137544

Submitted SNP(ss) Details: ss44137544

Submitter
Handle	ABI
Submitter SNP ID	hCV2020186
RefSNP(rs#)	rs12456529
Submitted Batch ID	xplore_hum_chr18_1
Submitted Date	Jul 18, 2005
Publication Cited	N.D.
First entry to dbSNP	Jul 18 2005 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	XPLORE
Ascertainment Samplesize	10
Population	Celera_Donors

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 2
Genotype Summary	population count: 13
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TCTGTTTCCC CAAGCAGAAT GCTGGGCCCA ACTGATGAAT GTTAGTGGGA GGGAACAATG
 GAAGAGGGTG GCTGGATGGC AATGAGAGGC CTGGGAAGGG CCTGGGGATG AGGAGGGGGT
 GGAAGCACTT CCTGAGGATC CATCCAGGCC CAGAGTTTTC AGCCGCCACC TCCAGAGCTC
 CGCCTGCCTG CTTGGCCAGG TCCAGTTGGC CCTGGCAGAA AGTCATCACC CTGTCCTTGC
 CAGCACTCCA TCCTTGGCTA TAAGTCTTAT CTGGTCAAGC TGCTCTCTGT ATTGGACCCT
 S
 CTGTCAAGTA TCTGGACTTC TGGGCTGATA GTCACCTTTT TTCTGTGATG TTTCTCCCTG
 GTCAGTCTCA GAATTAATAC ATTTTTCCTC TGCTAGTCCC CTCTCCTCTT CTGAAACAGC
 ATGGAGGTTC TGTCCACTCT AAACTCACCC AGGGTTTGGG CTGGGCTGGG CCGGATGCCC
 TGCATGCTGA TAACTCCATG TGGCCAGCCC ACGCCCTGGG TTATTTGCCA ACCTGCCTTC
 CAGTTTTGCA CAGTGCCATA CCTCAGGTGC CTTCTCATGC CAGCTAGTCA GAATGGAGTG

Submitted Frequency for ss44137544

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AoD_African_American - NORTH AMERICA	90	C=0.93000001	G=0.07000000				xplore_hum_chr18_1	ABI
AoD_Caucasian - NORTH AMERICA	92	C=0.76999998	G=0.23000000				xplore_hum_chr18_1	ABI

dbSNP summary of Genotypes for ss44137544

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	226	226	C=0.77433628	G=0.22566372	C/C=0.60176992 C/G=0.34513274 G/G=0.05309734	Pr(chiSq=0.017,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	C=0.75581396	G=0.24418604	C/C=0.51162791 C/G=0.48837209	Pr(chiSq=1.924,df=1) =0.200	Genotype Freq.
HapMap-JPT	172	172	C=0.76744187	G=0.23255815	C/C=0.60465115 C/G=0.32558140 G/G=0.06976745	Pr(chiSq=0.664,df=1) =0.439	Genotype Freq.
HAPMAP-ASW	98	98	C=0.90816325	G=0.09183674	C/C=0.81632656 C/G=0.18367347	Pr(chiSq=0.088,df=1) =1.000	Genotype Freq.
HAPMAP-CHB	82	82	C=0.70731705	G=0.29268292	C/C=0.53658539 C/G=0.34146342 G/G=0.12195122	Pr(chiSq=1.260,df=1) =0.273	Genotype Freq.
HAPMAP-CHD	170	170	C=0.76470590	G=0.23529412	C/C=0.55294120 C/G=0.42352942 G/G=0.02352941	Pr(chiSq=2.661,df=1) =0.150	Genotype Freq.
HAPMAP-GIH	176	176	C=0.83522725	G=0.16477273	C/C=0.70454544 C/G=0.26136363 G/G=0.03409091	Pr(chiSq=0.224,df=1) =0.655	Genotype Freq.
HAPMAP-LWK	180	180	C=0.98333335	G=0.01666667	C/C=0.96666664 C/G=0.03333334	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	100	100	C=0.75000000	G=0.25000000	C/C=0.56000000 C/G=0.38000000 G/G=0.06000000	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	280	280	C=0.92500001	G=0.07500000	C/C=0.85714287 C/G=0.13571429 G/G=0.00714286	Pr(chiSq=0.067,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	176	176	C=0.80113637	G=0.19886364	C/C=0.61363637 C/G=0.37500000 G/G=0.01136364	Pr(chiSq=2.754,df=1) =0.100	Genotype Freq.

Submitted individual genotype for ss44137544

There is no individual genotype data for ss44137544.

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