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Submitted SNP(ss) Details: ss4480397           
Submitter
HandleEGP_SNPS
Submitter SNP IDADPRT-006019
RefSNP(rs#)rs1805404
Submitted Batch IDADPRT-PDR90-062802
Submitted DateJul 01, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 1 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize166
PopulationPDR90
Allele
Observed AlleleT/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4480397|allelePos=256|len=511|taxid=9606|alleles='T/C'|mol=Genomic
 TAGGAGAACA AAAGTTTCAT GTGCTATCCC ACTGCTGGGG CTGGGACTGG GGTCGAGGTC
 AAGGTCAAGG TCTAGTGGGT CTAAGTCAAA AGTTAACTGC TTACTTACTT CCCTCTGTTT
 CTCTTCCTTC TAGTCGCCCA TGTTTGATGG AAAAGTCCCA CACTGGTACC ACTTCTCCTG
 CTTCTGGAAG GTGGGCCACT CCATCCGGCA CCCTGACGTT GAGGTGGATG GGTTCTCTGA
 GCTTCGGTGG GATGA
 Y
 CAGCAGAAAG TCAAGAAGAC AGCGGAAGCT GGAGGAGTGA CAGGTGTGTA CATACTGGGG
 CAGCATGGGC ATTCAGCCCC CACCCTGAAG CTCCCAGGAG GGCCTCGTCT CAGAGAGCAA
 AGCAAACCTC CCCCAGCTTG CCCTCTCCCA CATGTGCAGA TCAAGCGTAT GGTGCCCATG
 TTATTTCAGC AACACCTCCT GGACTCAGCA TCATCTGTTG CATGATATTT GGTATTTTGT
 TTTTCCAGGT GCTTG

  Submitted Frequency for ss4480397 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90166C=0.79518098
T=0.20481899
0.326 +/-0.052ADPRT-PDR90-062802EGP_SNPS


  dbSNP summary of Genotypes for ss4480397 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90166166C=0.79518074
T=0.20481928C/C=0.65060240
C/T=0.28915662
T/T=0.06024097
Pr(chiSq=1.047,df=1)
=0.317
Genotype
Freq.

  Submitted individual genotype for ss4480397 back to top
There is no individual genotype data for ss4480397.

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