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Submitted SNP(ss) Details: ss4480398           
Submitter
HandleEGP_SNPS
Submitter SNP IDADPRT-006144
RefSNP(rs#)rs1805407
Submitted Batch IDADPRT-PDR90-062802
Submitted DateJul 01, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 1 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize134
PopulationPDR90
Allele
Observed AlleleG/A
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4480398|allelePos=256|len=511|taxid=9606|alleles='G/A'|mol=Genomic
 CCTTCTAGTC GCCCATGTTT GATGGAAAAG TCCCACACTG GTACCACTTC TCCTGCTTCT
 GGAAGGTGGG CCACTCCATC CGGCACCCTG ACGTTGAGGT GGATGGGTTC TCTGAGCTTC
 GGTGGGATGA CCAGCAGAAA GTCAAGAAGA CAGCGGAAGC TGGAGGAGTG ACAGGTGTGT
 ACATACTGGG GCAGCATGGG CATTCAGCCC CCACCCTGAA GCTCCCAGGA GGGCCTCGTC
 TCAGAGAGCA AAGCA
 R
 ACCTCCCCCA GCTTGCCCTC TCCCACATGT GCAGATCAAG CGTATGGTGC CCATGTTATT
 TCAGCAACAC CTCCTGGACT CAGCATCATC TGTTGCATGA TATTTGGTAT TTTGTTTTTC
 CAGGTGCTTG GAATGTAGCC TTTAAAGTTG TTTTGTTTTT AATATACTTT ATTTTTGTTC
 ATGGCAAAAG TAAGCAAAGA ACAAAGAGTT TCCAGTACCC CCTCCCCCTC CCACCACACA
 GGCTCTTCCT TGTCA

  Submitted Frequency for ss4480398 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90134A=0.75373101
G=0.24626900
0.371 +/-0.053ADPRT-PDR90-062802EGP_SNPS


  dbSNP summary of Genotypes for ss4480398 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90134134A=0.75373137
G=0.24626866A/A=0.59701490
A/G=0.31343284
G/G=0.08955224
Pr(chiSq=1.625,df=1)
=0.251		Genotype
Freq.

  Submitted individual genotype for ss4480398 back to top
There is no individual genotype data for ss4480398.

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