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Submitted SNP(ss) Details: ss4480441           
Submitter
HandleEGP_SNPS
Submitter SNP IDADPRT-022575
RefSNP(rs#)rs1805408
Submitted Batch IDADPRT-PDR90-062802
Submitted DateJul 01, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 1 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleG/A
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4480441|allelePos=256|len=511|taxid=9606|alleles='G/A'|mol=Genomic
 CTGCAATGCC AGTGGTTGCT TTCCCTTCAT TTCTAAATCA CTGAGGGTTG GGGGCGCTGC
 AGGAACACTT GGAAATAAGG TCTCCTACAA GAATCCAAGC TCCATTGTAA ACCAAGGGTG
 GGTGGGGTGT TAAGAGCCCC ATAGCAAGCC CACAGCAAGA AGCCTCTCTT CTTTGTAGTG
 AGTGGAATCT GTGCAAGTTC CTCCATCCCA CATTAGTAAG TGTCCTTTTT TGTAGTCCCG
 CATTTGCCCT CTGAC
 R
 TGTTTCTCCA CTGGCTGCAG ATCTTGGACC GAGTAGCTGA TGGCATGGTG TTCGGTGCCC
 TCCTTCCCTG CGAGGAATGC TCGGGTCAGC TGGTCTTCAA GAGCGATGCC TATTACTGCA
 CTGGGGACGT CACTGCCTGG ACCAAGTGTA TGGTCAAGAC ACAGACACCC AACCGGAAGG
 AGTGGGTAAC CCCAAAGGTA AGGGGTAGGG GAAGATCCTG GGATCTGTTG GGAGAAAAAC
 CTGGCCCCAC TTTCT

  Submitted Frequency for ss4480441 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90174A=0.75862098
G=0.24137899
0.366 +/-0.047ADPRT-PDR90-062802EGP_SNPS


  dbSNP summary of Genotypes for ss4480441 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90174174A=0.75862068
G=0.24137931A/A=0.59770113
A/G=0.32183909
G/G=0.08045977
Pr(chiSq=1.278,df=1)
=0.273		Genotype
Freq.

  Submitted individual genotype for ss4480441 back to top
There is no individual genotype data for ss4480441.

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