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Submitted SNP(ss) Details: ss4480553           
Submitter
HandleEGP_SNPS
Submitter SNP IDADPRT-045054
RefSNP(rs#)rs747657
Submitted Batch IDADPRT-PDR90-062802
Submitted DateJul 01, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 1 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize174
PopulationPDR90
Allele
Observed AlleleC/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4480553|allelePos=256|len=511|taxid=9606|alleles='C/G'|mol=Genomic
 ATGTAAAAGG CCAGGGGTCT GGGGACTGTG GAATGTGGAC GGAAACCTAG AGCTGCTGAC
 CACCACTCCA AATAGGGCCT TGCCTTGAAA ATGGCCCCAT AGCAGTGATC GCTGGGCACA
 AACTATGTTC AGCCGCAACT GCAGTTTCAG GTTCTGGAAC AGTTCCAGAA ACTCAGGAGG
 GAGCCTGAGC AGTTTAGATG GTCTGGGTTT TGTGGACTTT TATCTCATCT CTGTATCTGA
 TCTTATTCTC CTAAT
 S
 AAACTGTTGG TTTCGAGAGC CCAGTGTGAA GGCCTCTTCT GAGACTGTCC TCTTTTGAAT
 AGGTATGAAC TGAAGCACGC TTCACATATC AGCAAGTTAC CCAAGGGCAA GCACAGTGTC
 AAAGGTAAAG TGTTTCCAAA GCTGTTGCTA CAGCCCGAGG CACCCTGGAC AGCACAGAAG
 CCGGGGGCTT GCTGTCCTGA GAAGGCTGCC TTGTGGCTGG CTGTCAAACA GCTGGAGATT
 CATTTTATCT TTTCG

  Submitted Frequency for ss4480553 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90174G=0.54597700
C=0.45402300
0.496 +/-0.010ADPRT-PDR90-062802EGP_SNPS


  dbSNP summary of Genotypes for ss4480553 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90174174G=0.54597700
C=0.45402297C/G=0.44827586
G/G=0.32183909
C/C=0.22988506
Pr(chiSq=0.799,df=1)
=0.403
Genotype
Freq.

  Submitted individual genotype for ss4480553 back to top
There is no individual genotype data for ss4480553.

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