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Submitted SNP(ss) Details: ss44836599           
Submitter
HandleABI
Submitter SNP IDhCV2548715
RefSNP(rs#)rs134
Submitted Batch IDxplore_hum_chr7_1
Submitted DateJul 19, 2005
Publication CitedN.D.
First entry to dbSNPJul 19 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44836599|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 AATGTAAACA GCCAGCTAAC AATGGGTAAT GCTCTATAAG TGCTAACTGA ACACTCTCAA
 ATAACAAGAA ACAAAATACC CTAGTGGGTC ATGTATCAGA TGTACACACT TCAAGTTTGT
 TTGTCCACTT AACTAAAAAT AACCCTGGGA CTCAGAATCT AAGCTTAAAC CAAATTCTAT
 AAATCGAAGT CCCCAAGATA TATTTTGGAG GTATCCTTCC AAAACTGCAG GGGCGATAAT
 AATTCCTTGT AAGAGAATCA CTAATTTAGG GAACATAGGT GGGGAGAAAA AGGGATACAG
 R
 AAGTTTTACT CACTTCTAGG GGAAAGAAAG ATTACTGCAA AAAACTTAAC CTGAGACACT
 TTTAAACTAG TGCAAACTGG AAAAAAGAGA GACATAAAAG GAAAAGGCAG AGTAAACAGG
 TTTTAAAAAG GTGGGGTGGT TACTGGTAGA CTAGAGCTAA AAGGCAAGAA AAACCTAAAA
 GCACCTCTGT TCCCAATGCT AACAATGACA TGGTTATTTT ATTCTCTCCA GTAGAGTGTA
 TAGATCAAAA GCAATTTGAA GACTGTCTCA TCCTTGTTTT TGTTTTTTCT TAATTGACAC

  Submitted Frequency for ss44836599 back to top
There is no frequency submission for ss44836599.


  dbSNP summary of Genotypes for ss44836599 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-JPT8888G=0.53409094
A=0.46590909A/G=0.56818181
G/G=0.25000000
A/A=0.18181819
Pr(chiSq=0.883,df=1)
=0.371
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090G=0.64444447
A=0.35555556A/G=0.57777780
G/G=0.35555556
A/A=0.06666667
Pr(chiSq=3.060,df=1)
=0.100
Genotype
Freq.
HapMap-CEU118118G=0.72881359
A=0.27118644G/G=0.55932206
A/G=0.33898306
A/A=0.10169491
Pr(chiSq=1.197,df=1)
=0.294
Genotype
Freq.
HapMap-YRI120120G=0.87500000
A=0.12500000G/G=0.75000000
A/G=0.25000000
Pr(chiSq=0.287,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss44836599 back to top
There is no individual genotype data for ss44836599.

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