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Submitted SNP(ss) Details: ss46525726           
Submitter
HandleBROAD
Submitter SNP IDmt12308
RefSNP(rs#)rs2853498
Submitted Batch IDHapMap-SNP-2004-08-20
Submitted DateApr 25, 2005
Publication Cited[1] The International HapMap Project
First entry to dbSNPApr 25 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBROAD_ENCODE_PCR_RESEQ-2004-08-32C
Ascertainment Samplesize32
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss46525726|allelePos=301|len=541|taxid=9606|alleles='A/G'|mol=Genomic
 GGCTCACTCA CCCACCACAT TAACAACATA AAACCCTCAT TCACACGAGA AAACACCCTC
 ATGTTCATAC ACCTATCCCC CATTCTCCTC CTATCCCTCA ACCCCGACAT CATTACCGGG
 TTTTCCTCTT GTAAATATAG TTTAACCAAA ACATCAGATT GTGAATCTGA CAACAGAGGC
 TTACGACCCC TTATTTACCG AGAAAGCTCA CAAGAACTGC TAACTCATGC CNCCATGTCT
 AACAACATGG CTTTCTCAAC TTTTAAAGGA TAACAGCTAT CCATTGGTCT TAGGCCCCAA
 R
 AATTTTGGTG CAACTCCAAA TAAAAGTAAT AACCATGCAC ACTACTATAA CCACCCTAAC
 CCTNACTTCC CTAATTCCCC CCATCCTTAC CACCCTCGTT AACCCNAACA AAAAAAACTC
 ATACCCCCAT TATGTAAAAT CCATTGTCGC ATCCACCTTT ATTATCAGTC TCTTCCCCAC
 AACAATATTC ATNTGCCTAG ACCAAGAAGT NATTATCTCG AACTGACACT GAGCCACAAC

  Submitted Frequency for ss46525726 back to top
There is no frequency submission for ss46525726.


  dbSNP summary of Genotypes for ss46525726 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HAPMAP-ASW9898A=0.97959185
G=0.02040816A/A=0.97959185
G/G=0.02040816
Pr(chiSq=47.041,df=1)
=0.001
Genotype
Freq.
HAPMAP-MEX100100A=0.95999998
G=0.04000000A/A=0.95999998
G/G=0.04000000
Pr(chiSq=46.160,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176A=0.84090906
G=0.15909091A/A=0.84090906
G/G=0.15909091
Pr(chiSq=64.455,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176A=0.77272725
G=0.22727273A/A=0.77272725
G/G=0.22727273
Pr(chiSq=57.091,df=1)
=0.001
Genotype
Freq.
HapMap-CEU226226A=0.75221241
G=0.24778761A/A=0.75221241
G/G=0.24778761
Pr(chiSq=70.876,df=1)
=0.001
Genotype
Freq.
HapMap-YRI226226A=0.99115044
G=0.00884956A/A=0.99115044
G/G=0.00884956
Pr(chiSq=111.018,df=1)
=0.001
Genotype
Freq.
HAPMAP-MKK286286A=0.97902095
G=0.02097902A/A=0.97902095
G/G=0.02097902
Pr(chiSq=137.126,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss46525726 back to top
There is no individual genotype data for ss46525726.

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