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Submitted SNP(ss) Details: ss48415346           
Submitter
HandleAPPLERA_GI
Submitter SNP IDhCV25997233
RefSNP(rs#)rs34725104
Submitted Batch ID1-1
Submitted DateNov 30, 2005
Publication Cited[1] Natural Selection on Protein Coding Genes in the Human Genome
First entry to dbSNPSep 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGI_ASP PIPELINE
Ascertainment Samplesize76
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss48415346|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 CTGCCAACCA CAGGTACGTG GTTCAGGGGG CTCCGGGGCT CTGGGGCTCT GGGGCTCTGG
 GGCTCTGGTG CCATGTGATT CTGGATATGG GGCTGGGGCC TGGGCGCCTG GTGCTTCTAC
 CCTGGCGAGG GATCCCTGCT CTGCCTGGCT TGGTTTTGGT CTGAGGTCTT GCGCTGGGGC
 TGCGTGAAGC CTGGCTGAGC TGGTGTGGAG GAGCAATGCC CTGGGCCAGC CCTGGGGCAG
 GGTGGCTGCA GCCTCTCCAG GGCCTTGTCC TCTCTGTTCC AACAGGGGCC AGCTGGAGAT
 Y
 AGCAGCCTGG TGCCCCTGGG GCCCAAGTAT GTGGTGAAGT GGAACACGGC GCTGCCCCAG
 GTGCAGGTGG TGGAGGTGGG CCAGGACGGT GGCACCTATG ACAAGGACAA TGTGCTCATC
 CAGCACTCAG GCGCCAAGAA GGCCTCTGCC TCAGGGCAGG CTCAGAGTGA GTACCCCCTC
 TCTGTGCCCT GCGTTCGTCA CCCTCGCCCT CACCAGCCAC AGCCTGGGCT GCTCCTACCC
 AGGCTTGGCC CTGTCTTGGG GACCCCTACA TAGGCTGATG GGTGGCTTGG CCAGGAAGCT

  Submitted Frequency for ss48415346 back to top
There is no frequency submission for ss48415346.


  dbSNP summary of Genotypes for ss48415346 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AGI_ASP population
NORTH AMERICA
7676C=0.93421054
T=0.06578948C/C=0.89473683
C/T=0.07894737
T/T=0.02631579
Pr(chiSq=4.863,df=1)
=0.050
Genotype
Freq.

  Submitted individual genotype for ss48415346 back to top
There is no individual genotype data for ss48415346.

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