Submitted SNP(ss) Details: ss48420540

Submitted SNP(ss) Details: ss48420540

Submitter
Handle	APPLERA_GI
Submitter SNP ID	hCV25597992
RefSNP(rs#)	rs34221914
Submitted Batch ID	1-1
Submitted Date	Nov 30, 2005
Publication Cited	[1] Natural Selection on Protein Coding Genes in the Human Genome
First entry to dbSNP	Sep 28 2005 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	hCG22627_9_1_341003000000008_6
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	AGI_ASP PIPELINE
Ascertainment Samplesize	78
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	population count: 12
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGCTGAAGCC CGCTGGATCC GGTGGGTCAG GGCATAGGGC GGACTCCGTC AGTTAGGGGG
 CAGAAAGGGA ACACGTTGTG AAACCACAAC TTCCCACCGC AGACAGGAGA ATGGGGTCAA
 GGCCTCAGGC CACTGATGTC CCTTACCAAG AGCTCTGCTG GGCAACTGGT CCCAGGACCA
 TGTCACCTGC GGGCAGAGCG CCTCCTGGGT CTCGGGGTAG CCAGGGGTCC AGCTGTTACC
 CACCAACTGG ACGGTGCAGA TCTTCTCACT GCTGTCAGGA GGTGCTAGAA GGGTGTGGGC
 R
 CTGTCCAAGG GTGACAGATG GGTGGCCTGG AAGCCAAGAG GGGCCCCAGG TCAGCCCTGC
 TTGCCAAGTA AGGCCCCTTA CCCGCAGTGC CTCTCCAGGA GGGGACAGTC CCTGGTTCAG
 TCAGCAGACA CCCCCGCAAT GACACCTCCC ACAGTTGGCC CTGCTCTCAC TGTAGCCCAG
 CAGAACTCTT GCTTCTGCCT TGAGTCCCCT GCCCCCGCCT CCTTCCTCTT GTCCCCCAGC
 ACCATGGGGC TCTCCTTCCA TTGAACTGTT AGCTCCTGTG TACGAATCTG AACTCCAGCT

Submitted Frequency for ss48420540

There is no frequency submission for ss48420540.

dbSNP summary of Genotypes for ss48420540

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-CEU	222	222	G=0.99549550	A=0.00450450	G/G=0.99099100 A/G=0.00900901	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HapMap-YRI	224	224	G=0.98660713	A=0.01339286	G/G=0.97321427 A/G=0.02678571	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
AGI_ASP population - NORTH AMERICA	76	76	G=0.98684210	A=0.01315789	G/G=0.97368419 A/G=0.02631579	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	G=0.96938777	A=0.03061225	G/G=0.93877554 A/G=0.06122449	Pr(chiSq=0.003,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	170	170	G=0.99411762	A=0.00588235	G/G=0.98823529 A/G=0.01176471	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	174	174	G=0.99425286	A=0.00574713	G/G=0.98850572 A/G=0.01149425	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	178	178	G=0.98314607	A=0.01685393	G/G=0.96629214 A/G=0.03370786	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
HAPMAP-MEX	96	96	G=0.98958331	A=0.01041667	G/G=0.97916669 A/G=0.02083333	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	284	284	G=0.98943663	A=0.01056338	G/G=0.97887325 A/G=0.02112676	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-TSI	174	174	G=0.99425286	A=0.00574713	G/G=0.98850572 A/G=0.01149425	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss48420540

There is no individual genotype data for ss48420540.

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