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Submitted SNP(ss) Details: ss48420666           
Submitter
HandleAPPLERA_GI
Submitter SNP IDhCV7566349
RefSNP(rs#)rs1800861
Submitted Batch ID1-1
Submitted DateNov 30, 2005
Publication Cited[1] Natural Selection on Protein Coding Genes in the Human Genome
First entry to dbSNPSep 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodAGI_ASP PIPELINE
Ascertainment Samplesize78
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginA:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss48420666|allelePos=301|len=601|taxid=9606|alleles='T/G'|mol=Genomic
 AACATAATGC CACATACACA GGTGGCCCAG CCCTGGGACA CTCTGGGGAA AGATCCGGCA
 TGTGTGGTTG CTGGCTCCTC AGGGTGCTTC TTCCTCAGGG TGGATGAGGC CCCTGTCCAC
 TGATCCCAAA GGCTGGGAGA AGCCTCAAGC AGCATCGTCT TTGCAGGCCT CTCTGTCTGA
 ACTTGGGCAA GGCGATGCAG GTCCATCCTG ACCTGGTATG GTCATGGAAG GGGCTTCCAG
 GAGCGATCGT TTGCAACCTG CTCTGTGCTG CATTTCAGAG AACGCCTCCC CGAGTGAGCT
 K
 CGAGACCTGC TGTCAGAGTT CAACGTCCTG AAGCAGGTCA ACCACCCACA TGTCATCAAA
 TTGTATGGGG CCTGCAGCCA GGATGGTAAG GCCAGCTGCA GGGTGAGGTG GGCAGCCACT
 GCACCCAGGC TGGGGGCTCC ATACAGCCCT GTTCTCCCTC TTTCTCCCTT TCCCTACTGC
 TCCTGCCCTG TTTCCTGTTC TCCCTCTTTC TGGAAGCCTG GCTCAGGCCC CAGCCTGGAG
 CTTGTGTCTA GCTGAGTCCA CGGGCTGAGT GGTCACTTTC CATCAGAGGG GCCCCGCGCT

  Submitted Frequency for ss48420666 back to top
There is no frequency submission for ss48420666.


  dbSNP summary of Genotypes for ss48420666 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
AGI_ASP population
- NORTH AMERICA 		7878T=0.82051283
G=0.17948718T/T=0.69230771
G/T=0.25641027
G/G=0.05128205
Pr(chiSq=0.654,df=1)
=0.439		Genotype
Freq.

  Submitted individual genotype for ss48420666 back to top
There is no individual genotype data for ss48420666.

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