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Submitted SNP(ss) Details: ss48426828           
Submitter
HandleAPPLERA_GI
Submitter SNP IDhCV11638763
RefSNP(rs#)rs1051741
Submitted Batch ID1-1
Submitted DateNov 30, 2005
Publication Cited[1] Natural Selection on Protein Coding Genes in the Human Genome
First entry to dbSNPSep 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGI_ASP PIPELINE
Ascertainment Samplesize76
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss48426828|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 TGGCAGGAGA GAGGGGACAG GTGTGTAGAG GCAAGGTGGG TGGGGGGAGG ACCTTGGGGT
 GATAAGAGAC ACTTCAACTA AATCCATGCG CTCCAGTCTA GTGCCCTGGG CGCAGCCTGC
 CTGTGACACG AGGATACCAC ACACGTTGCA TGAGGTCTGA GGAGGGAAGC CGCATGGGCA
 GGGCCTGGCA TTTGTAGGAC TTTCTGGCTG CCCTTTGTCA CACAACTGCA TGTGGCACTG
 AGAGTGGGGC TTTGTGTTCT GCGTTCCCAG GAAGTTCTCC CTGGACGACC TGCTGACCAA
 Y
 GTCATGCTCT ACTGGACAAC AGGCACCATC ATCTCCTCCC AGCGCTTCTA CAAGGAGAAC
 CTGGGACAGG GCTGGATGAC CCAGAAGCAT GAGCGGTGAG CCTGGCTGAG CCGAGAACAG
 GGGCCTCTGA GGCTGGAGGC AGGGGGACGG CCAGTCTTGG GCTCCACGAA GGGCACTTGG
 TGGTGGGATA AGTATAGCCT TGCCTGCAGG TGCCCCAGGG GCCCTTGGAT GGGAACACTA
 AAGGTCGAGG TGTTTGGAGA AAGCCCTCAT GGAGGGACCA GGTGCCTGGC TCCCGGGCGG

  Submitted Frequency for ss48426828 back to top
There is no frequency submission for ss48426828.


  dbSNP summary of Genotypes for ss48426828 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AGI_ASP population
NORTH AMERICA
7474C=0.89189190
T=0.10810811C/C=0.81081080
C/T=0.16216215
T/T=0.02702703
Pr(chiSq=0.936,df=1)
=0.343
Genotype
Freq.

  Submitted individual genotype for ss48426828 back to top
There is no individual genotype data for ss48426828.

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