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Submitted SNP(ss) Details: ss48429786           
Submitter
HandleAPPLERA_GI
Submitter SNP IDhCV15752173
RefSNP(rs#)rs2296226
Submitted Batch ID1
Submitted DateNov 30, 2005
Publication CitedN.D.
First entry to dbSNPSep 28 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodAGI_ASP PIPELINE
Ascertainment Samplesize78
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss48429786|allelePos=301|len=601|taxid=9606|alleles='C/T'|mol=Genomic
 CCTCCCAGGA CACTGACAAG CAGATACCAT CTGGGCCGTC TCCAACCAGG GCCCTGCGCT
 CACATGGGGC TGAGGGGTGG GAGGATGCTG CTCCCACTGT CTTTTAGGTG GGAAGTTGGA
 GGCGAGAAGA CAGAGGGAAG GAAGCTTTCT CCTGGGGACC TGGCCCTCCC GCCACTACCC
 CAACGTGGTC CCACCTGACA GGCTGCTGGG GCTCATCTGC TGTGTCAGGA TGGCCTTGAG
 CTTCTTGATC TCCTCCTGGT ACTCGCGAAG CAGCGCATCC TTGGGGTCCT CATTGATGCG
 Y
 GGCTTGTTCC TGATGTTCTT GGCCCGGTTG GCGTAGCGCA GCGTGCTGAG TGTCTCATCG
 TAGTTGTTGT CCGCAGGCGA CAGGCAGGCC ACCATGAGCG TCTTGGTGTT GCCGCCCAGT
 GAGTCCTGCA GCAGCCGCGT CAGCTTCGAG TCACGGTAGG GGACGTGCTT ACAGCGCCCG
 TCCACCAGCG CCGAGATGAC ATTGCCCAGT GCCGAGAGCG ACAGGTTGAT CTTGGTGGCC
 TCCTTGAGCC GCTCGCCCGT GGCCCCGGTC TTGGACTGCC GCTCGCTGCC CGCCAGGTCC

  Submitted Frequency for ss48429786 back to top
There is no frequency submission for ss48429786.


  dbSNP summary of Genotypes for ss48429786 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
AGI_ASP population
- NORTH AMERICA 		7878C=0.85897434
T=0.14102565C/C=0.79487181
C/T=0.12820514
T/T=0.07692308
Pr(chiSq=8.645,df=1)
=0.005		Genotype
Freq.

  Submitted individual genotype for ss48429786 back to top
There is no individual genotype data for ss48429786.

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