NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss489724899           
Submitter
Handle1000GENOMES
Submitter SNP ID20110521_exome_296502_chr1_18152582
RefSNP(rs#)rs478698
Submitted Batch IDphase_1_exome_sites_20110521
Submitted DateFeb 10, 2012
Publication CitedN.D.
First entry to dbSNPFeb 10 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodEXOME_CAPTURE
Ascertainment Samplesize2256
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss489724899|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GTGCAGCCTT TCCACCAGGG CCGCCCCTTG CCCGCCAGCG GCAAGACGCT GGAGTTCGCC
 GGCCAGGATC TCTCCGCCTA TCTCCTCAAG AGTCTCTTTA AGGAAGATTG CGATAGACGC
 TGCCTGTTTC AGCTGGAGAC AGTCGCCGTG ACTCAGATGA ACAAGTGCTA CGTGCCGCAG
 AATCTGGGGG AGGCCCTGGA
 Y
 TTTCGTGAGA GGCAGCAGAG TGCCTTGGAT GAGAGCAACA CCTATCAGCT CCCAGACGGC
 TCCCGCGTGG AGCTGACCCC CATGCAGCGG GTGGCTCCTG AGATGTTCTT TAGCCCGCAG
 GTGTTCGAGC AGCCGGGGCC CAGCATCCCA CGGGCCATTG TGGAATCCGT GGAGTCCTGC
 GAGATCTCCC TGCGCCCCCT

  Submitted Frequency for ss489724899 back to top
There is no frequency submission for ss489724899.


  dbSNP summary of Genotypes for ss489724899 back to top
No sufficient data to compute Hardy-weinberg probability for ss489724899.


  Submitted individual genotype for ss489724899 back to top
There is no individual genotype data for ss489724899.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement