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Submitted SNP(ss) Details: ss491581586           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr1-7315
RefSNP(rs#)rs200503540
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize298
PopulationCSAgilent
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491581586|allelePos=26|len=51|taxid=9606|alleles='C/T'|mol=Genomic
 CTCTCCCACA TCATCAGGGG CACAG
 Y
 GTGCACTGTG GGGTCCCAGG CCTCC

  Submitted Frequency for ss491581586 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
298C/C=0.99299997
C/T=0.00700000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491581586 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
297298.000001430511C=0.99650002
T=0.00350000C/C=0.99300003
C/T=0.00700000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss491581586 back to top
There is no individual genotype data for ss491581586.