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Submitted SNP(ss) Details: ss491581598           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr1-53534
RefSNP(rs#)rs80011619
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize514
PopulationCSAgilent
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491581598|allelePos=26|len=51|taxid=9606|alleles='G/A'|mol=Genomic
 TATCCAAAGC ATTCTTCACT TCGTC
 R
 GCTCACATCA CCGTAGTGGT TTTGT

  Submitted Frequency for ss491581598 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
514G/G=0.78600001
A/G=0.19800000
A/A=0.01600000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491581598 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
513514.000000953674G=0.88499999
A=0.11500000G/G=0.78600001
A/G=0.19800000
A/A=0.01600000
Pr(chiSq=0.191,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss491581598 back to top
There is no individual genotype data for ss491581598.