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Submitted SNP(ss) Details: ss491584485           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr1-11632647
RefSNP(rs#)rs61731861
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize1316
PopulationCSAgilent
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491584485|allelePos=26|len=51|taxid=9606|alleles='T/C'|mol=Genomic
 TCATCGTGGG TGAACTCCAC CCCAC
 Y
 GTCTCCAGGC AGCTCCTCCA CCCTC

  Submitted Frequency for ss491584485 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
1316T/T=0.98799998
C/T=0.01200000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491584485 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
13151316.00000762939T=0.99400002
C=0.00600000T/T=0.98800004
C/T=0.01200000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss491584485 back to top
There is no individual genotype data for ss491584485.