NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss491587203           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr1-18022200
RefSNP(rs#)rs55738309
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize1324
PopulationCSAgilent
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491587203|allelePos=26|len=51|taxid=9606|alleles='C/A'|mol=Genomic
 TTCCCGAACA TCGTGAACTA CCTAC
 M
 GTGCAAGGAG AACCCTGGCC CCAGC

  Submitted Frequency for ss491587203 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
1324C/C=0.98600000
A/C=0.01400000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491587203 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
13231323.99999046326C=0.99299997
A=0.00700000C/C=0.98600000
A/C=0.01400000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss491587203 back to top
There is no individual genotype data for ss491587203.