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Submitted SNP(ss) Details: ss491849913           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr4-1777692
RefSNP(rs#)rs7688609
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize378
PopulationCSAgilent
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491849913|allelePos=26|len=51|taxid=9606|alleles='G/A'|mol=Genomic
 ACAACCTCGA CTACTACAAG AAGAC
 R
 ACCAACGTGA GCCCGGCCCT GGGGT

  Submitted Frequency for ss491849913 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
378A/A=0.99500000
A/G=0.00500000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491849913 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
377378.000015854836A=0.99750000
G=0.00250000A/A=0.99499995
A/G=0.00500000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss491849913 back to top
There is no individual genotype data for ss491849913.

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