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Submitted SNP(ss) Details: ss491923164           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr8-27376553
RefSNP(rs#)rs56298562
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize1186
PopulationCSAgilent
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491923164|allelePos=26|len=51|taxid=9606|alleles='G/A'|mol=Genomic
 TTGGGACCTG AGGCCCCAGA GTGCA
 R
 GTGGCCGTGG CTGCAGAGGG TGCCC

  Submitted Frequency for ss491923164 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
1186G/G=0.93300003
A/G=0.06700000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491923164 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
11851186.00009155273G=0.96649998
A=0.03350000G/G=0.93299997
A/G=0.06699999
Pr(chiSq=0.047,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss491923164 back to top
There is no individual genotype data for ss491923164.