NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss491924637           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr8-42710790
RefSNP(rs#)rs78682427
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize1324
PopulationCSAgilent
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491924637|allelePos=26|len=51|taxid=9606|alleles='C/T'|mol=Genomic
 ATCTTTTTCT CTTTTGCAGG TAGTA
 Y
 AAGACTGGAA ATTTGTAGCT CAAGT

  Submitted Frequency for ss491924637 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
1324C/C=0.99800003
C/T=0.00200000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491924637 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
13231324.00005078316C=0.99900001
T=0.00100000C/C=0.99800003
C/T=0.00200000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss491924637 back to top
There is no individual genotype data for ss491924637.