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Submitted SNP(ss) Details: ss491947155           
Submitter
HandleCLINSEQ_SNP
Submitter SNP IDSNV-chr9-139046223
RefSNP(rs#)rs7469569
Submitted Batch IDSubmission1_FEB2012
Submitted DateMar 06, 2012
Publication Cited19602640
First entry to dbSNPMar 6 2012 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAGILENTWHOLEEXOME
Ascertainment Samplesize1234
PopulationCSAgilent
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss491947155|allelePos=26|len=51|taxid=9606|alleles='T/C'|mol=Genomic
 CCCAGGTTGC CTAGCTGTCC CCAGC
 Y
 TGGGCCTCCC CGAGGGCCAG ACACT

  Submitted Frequency for ss491947155 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CSAgilent
EUROPE
1234C/T=0.48300001
C/C=0.39700001
T/T=0.12000000
Submission1_FEB2012CLINSEQ_SNP


  dbSNP summary of Genotypes for ss491947155 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
CSAgilent
EUROPE
12331234.00004577637C=0.63849998
T=0.36149999C/T=0.48300004
C/C=0.39700001
T/T=0.12000000
Pr(chiSq=1.322,df=1)
=0.251
Genotype
Freq.

  Submitted individual genotype for ss491947155 back to top
There is no individual genotype data for ss491947155.

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