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Submitted SNP(ss) Details: ss5167311           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0393911
RefSNP(rs#)rs2853493
Submitted Batch IDTSC-WUGSC-Sep-19-2002-SNP_SUBMISSION
Submitted DateSep 19, 2002
Publication CitedN.D.
First entry to dbSNPSep 19 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-WUGSC-1-2
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 9
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5167311|allelePos=496|len=1237|taxid=9606|alleles='A/G'|mol=Genomic
 ACTCCTACCC CTCACAATCA TGGCAAGCCA ACGCCACTTA TCCAGTGAAC CACTATCACG
 AAAAAAACTC TACCTCTCTA TACTAATCTC CCTACAAATC TCCTTAATTA TAACATTCAC
 AGCCACAGAA CTAATCATAT TTTATATCTT CTTCGAAACC ACACTTATCC CCACCTTGGC
 TATCATCACC CGATGAGGCA ACCAGCCAGA ACGCCTGAAC GCAGGCACAT ACTTCCTATT
 CTACACCCTA GTAGGCTCCC TTCCCCTACT CATCGCACTA ATTTACACTC ACAACACCCT
 AGGCTCACTA AACATTCTAC TACTCACTCT CACTGCCCAA GAACTATCAA ACTCCTGAGC
 CAACAACTTA ATATGACTAG CTTACACAAT AGCTTTTATA GTAAAGATAC CTCTTTACGG
 ACTCCACTTA TGACTCCCTA AAGCCCATGT CGAAGCCCCC ATCGCTGGGT CAATAGTACT
 TGCCGCAGTA CTCTT
 R
 AAACTAGGCG GCTATGGTAT AATACGCCTC ACACTCATTC TCAACCCCCT GACAAAACAC
 ATAGCCTACC CCTTCCTTGT ACTATCCCTA TGAGGCATAA TTATAACAAG CTCCATCTGC
 CTACGACAAA CAGACCTAAA ATCGCTCATT GCATACTCTT CAATCAGCCA CATAGCCCTC
 GTAGTAACAG CCATTCTCAT CCAAACCCCC TGAAGCTTCA CCGGCGCAGT CATTCTCATA
 ATCGCCCACG GACTTACATC CTCATTACTA TTCTGCCTAG CAAACTCAAA CTACGAACGC
 ACTCACAGTC GCATCATAAT CCTCTCTCAA GGACTTCAAA CTCTACTCCC ACTAATAGCT
 TTTTGATGAC TTCTAGCAAG CCTCGCTAAC CTCGCCTTAC CCCCCACTAT TAACCTACTG
 GGAGAACTCT CTGTGCTAGT AACCACGTTC TCCTGATCAA ATATCACTCT CCTACTTACA
 GGACTCAACA TACTAGTCAC AGCCCTATAC TCCCTCTACA TATTTACCAC AACACAATGG
 GGCTCACTCA CCCACCACAT TAACAACATA AAACCCTCAT TCACACGAGA AAACACCCTC
 ATGTTCATAC ACCTATCCCC CATTCTCCTC CTATCCCTCA ACCCCGACAT CATTACCGGG
 TTTTCCTCTT GTAAATATAG TTTAACCAAA ACATCAGATT GTGAATCTGA CAACAGAGGC
 TTACGACCCC TTATTTACCG A

  Submitted Frequency for ss5167311 back to top
There is no frequency submission for ss5167311.


  dbSNP summary of Genotypes for ss5167311 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.75221241
G=0.24778761A/A=0.75221241
G/G=0.24778761
Pr(chiSq=70.876,df=1)
=0.001
Genotype
Freq.
HapMap-YRI226226A=0.97345132
G=0.02654867A/A=0.97345132
G/G=0.02654867
Pr(chiSq=107.159,df=1)
=0.001
Genotype
Freq.
HAPMAP-ASW9898A=0.97959185
G=0.02040816A/A=0.97959185
G/G=0.02040816
Pr(chiSq=47.041,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176A=0.84090906
G=0.15909091A/A=0.84090906
G/G=0.15909091
Pr(chiSq=64.455,df=1)
=0.001
Genotype
Freq.
HAPMAP-MEX100100A=0.95999998
G=0.04000000A/A=0.95999998
G/G=0.04000000
Pr(chiSq=46.160,df=1)
=0.001
Genotype
Freq.
HAPMAP-MKK286286A=0.97902095
G=0.02097902A/A=0.97902095
G/G=0.02097902
Pr(chiSq=137.126,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176A=0.76136363
G=0.23863636A/A=0.76136363
G/G=0.23863636
Pr(chiSq=56.023,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss5167311 back to top
There is no individual genotype data for ss5167311.

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