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Submitted SNP(ss) Details: ss5358175           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC1526643
RefSNP(rs#)rs4018608
Submitted Batch IDTSC-CSHL-Sep-19-2002-SNP_SUBMISSION-31
Submitted DateSep 20, 2002
Publication CitedN.D.
First entry to dbSNPSep 20 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-CSHL-31
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 15
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5358175|allelePos=410|len=910|taxid=9606|alleles='A/G'|mol=Genomic
 CCgtggctcc tgcctgtgat tccagcactt ccggaggctg aggcctgaga atcagttgag
 gccaggagtt tgagaccacc ttgggcaaca tagtgagatc ccagctctac aaaaaaaaaa
 aaattagcta ggcgtggtgg catgcgtctg tagtctcagc tactcaggag gctgaggtgg
 gaggattgct tgagccgagg tggtcaaggc cacagtgact ccagcctggg cgacagagca
 agaccctgtc tcacgaaaaa TAAGTAAATA AACTCTTATG CCCTGGCCCT GCCTCCCTGG
 CCAGTCTTAT CCCTGCCCTC ACTGTGCTTG GGCCCTTGCA CACTGCACTT TCTCAGGTGT
 GGCCTGTTCA CCTGTGGCCC CTTCTACCAG GAAGACAGCT GCTCTGCCC
 R
 GTGAGTGCCT TGGAGTCTCC AGAGTCCTCG TCCCTCCAGC CGCAGAGGCT CCCCCGTTCT
 GCGGCTCGTT TTGCTTGTGG CTAGTGGTAA ATGCTGGGCA GCGGGCTTCC GGGTGCGGTG
 AAGGGGCCGG CGGTGGTGCC TGCCCACTTC TATGGTGTGG ATTCTCCATC AGTGCGGGGT
 CCTTGAGCTG AGTTGGAAGG TGCGAGTAGC TGCCCTCAGG AGCTGGTCTG AGGCTGTGGC
 CCGAATACCC CCTCAAGCCC TGTAAATGTA TCCCTGCGTG AGTTTTTGGA GGACAGGAAC
 GAGGCTTTGG GTTTCTCCTC GTCTTTGTAC CTGAGCTGTA CGTCGTGTCA ATGAAGGTGG
 TGGCGGGACA GACGGGAAGA GAGAAGCCGC AGGGCCTCTG GGTGTCTGGG CGGGTGGCAA
 GCGAGGGTGA CCTGTGAGCT GTGACTCTGG GTGACCGGGC CCTGAATGAA TGGCGGGCTG
 CAGAGGCGGG AGTGGGGCTG

  Submitted Frequency for ss5358175 back to top
There is no frequency submission for ss5358175.


  dbSNP summary of Genotypes for ss5358175 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.97345132
G=0.02654867A/A=0.94690263
A/G=0.05309734
Pr(chiSq=0.004,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282A=0.52439022
G=0.47560975A/G=0.51219511
A/A=0.26829270
G/G=0.21951219
Pr(chiSq=0.030,df=1)
=1.000
Genotype
Freq.
HapMap-JPT170170G=0.68235296
A=0.31764707G/G=0.48235294
A/G=0.40000001
A/A=0.11764706
Pr(chiSq=0.507,df=1)
=0.479
Genotype
Freq.
HapMap-YRI222222A=0.69819820
G=0.30180180A/A=0.46846846
A/G=0.45945945
G/G=0.07207207
Pr(chiSq=0.904,df=1)
=0.343
Genotype
Freq.
HAPMAP-ASW9898A=0.75510204
G=0.24489796A/A=0.55102038
A/G=0.40816328
G/G=0.04081633
Pr(chiSq=0.526,df=1)
=0.479
Genotype
Freq.
HAPMAP-CHB8080G=0.67500001
A=0.32499999G/G=0.47499999
A/G=0.40000001
A/A=0.12500000
Pr(chiSq=0.312,df=1)
=0.584
Genotype
Freq.
HAPMAP-CHD164164G=0.60365856
A=0.39634147A/G=0.54878050
G/G=0.32926831
A/A=0.12195122
Pr(chiSq=1.768,df=1)
=0.200
Genotype
Freq.
HAPMAP-GIH176176A=0.65340906
G=0.34659091A/G=0.44318181
A/A=0.43181819
G/G=0.12500000
Pr(chiSq=0.041,df=1)
=1.000
Genotype
Freq.
HAPMAP-LWK178178A=0.69101125
G=0.30898875A/A=0.48314607
A/G=0.41573033
G/G=0.10112359
Pr(chiSq=0.062,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX9898A=0.63265306
G=0.36734694A/G=0.44897959
A/A=0.40816328
G/G=0.14285715
Pr(chiSq=0.057,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK286286A=0.92307693
G=0.07692308A/A=0.84615386
A/G=0.15384616
Pr(chiSq=0.147,df=1)
=0.752
Genotype
Freq.
HAPMAP-TSI176176A=0.98295456
G=0.01704546A/A=0.96590906
A/G=0.03409091
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss5358175 back to top
There is no individual genotype data for ss5358175.