Submitted SNP(ss) Details: ss5586193

Submitted SNP(ss) Details: ss5586193

Submitter
Handle	SNP500CANCER
Submitter SNP ID	ADH1C-01
RefSNP(rs#)	rs698
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_006397.13
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	ADH1C-01

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	G:Germline A:Germline
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment

Platform: Sequencing Primer F: TGAGAGAGAGAATAACTAAGGACCC, Temp: 51.4, GC Content:44, Product Size: 352 Primer R: TTTCCAGAGCGAAGCAGG, Temp: 51.4, GC Content:55.56
Platform: TaqMan Forward primer: AGCGAAGCAGGTCAAATCCTT, Amount: 900 nM Reverse primer: GCTAAGAAGTTTTCACTGGATGCAT, Amount: 900 nM Probe 1: TTCAAAAGGTAAAACATTT, Amount: 200 nM Probe 2: TTCAAAAGGTAAAATATTT, Amount: 200 nM Annealing temperature: 62 C

Fasta sequence (Legend)

 TGGTTGAATC TATCAATGAT ATTTTCTTCT TTTCAGGCTT TAAGAGTAAA GAATCTGTCC
 CSAAACTTGT GGCTGACTTT ATGGCTAAGA AGTTTTCACT GGATGCATTA ATAACAAAT
 R
 TTTTACCTTT TGAAAAAATA AATGAAGGAT TTGACCTGCT TCGCTCTGGA AAGAGGTAGA
 TTTTAAGTTG TTTTTTTGTT TTGCTTTGTA TTCTACAGTA GCGGCGKGGG GSGGGSGTTG
 TCTAGCAGAG AATGAAAAGG TGGAAGGATG AGA

Submitted Frequency for ss5586193

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
AFR1 - MULTI-NATIONAL	48	A=0.93800002	G=0.06200000	0.116 +/-0.086	A/A=0.87500000 A/G=0.12500000 G/G=0.00000000	0.125	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	44	A=0.84100002	G=0.15899999	0.267 +/-0.106	A/A=0.72700000 A/G=0.22700000 G/G=0.04600000	0.227	08272003	SNP500CANCER
P1 - MULTI-NATIONAL	192	A=0.71899998	G=0.28099999	0.404 +/-0.040	A/A=0.56300002 A/G=0.31299999 G/G=0.12400000	0.313	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A=0.60900003	G=0.39100000	0.476 +/-0.044	A/G=0.43500000 A/A=0.39100000 G/G=0.17399999	0.435	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	54	A=0.51899999	G=0.48100001	0.499 +/-0.007	A/G=0.44400001 A/A=0.29600000 G/G=0.25999999	0.444	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586193

No sufficient data to compute Hardy-weinberg probability for ss5586193.

Submitted individual genotype for ss5586193

There is no individual genotype data for ss5586193.

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