Submitted SNP(ss) Details: ss5586199

Submitted SNP(ss) Details: ss5586199

Submitter
Handle	SNP500CANCER
Submitter SNP ID	PARP1-07
RefSNP(rs#)	rs4986815
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	PARP1-07

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	A/-
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	DIV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: Sequencing Primer F: TCTGGTAAACAGGATGACGC, Temp: 50, GC Content:50, Product Size: 365 Primer R: TGTAGTCCCGCATTTGCC, Temp: 51.6, GC Content:55.56

Fasta sequence (Legend)

 TAGTGAGTGG AATCTGTGCA AGTTCCTCCA TCCCACATTA GTAAGTGTCC TTTTTTGTAG
 TCCCGCATTT GCCCTCTGAC RTGTTTCTCC ACTGGCTGCA GATCTTGGAC CGAGTAGCYG
 ATGGCATGGT GTTCGGTGCC CTCCTTCCCT GCGAGGAATG CTCGGGTCAG CTGGTCTTCA
 AGAGCGATGC CTATTACTGC ACTGGGGACG TCACTGCCTG GACCAAGTGT ATGGTCAAGA
 CACAGACACC CAACCGGAAG GAGTGGRTAA CCCCAAAGGT A
 N
 GGGGTAGGGG AAGATCCTGG GATCTGTTGG GAGAAAAACC TGGCCCCACT TTCTGCGCTT
 GTTTATACTT CAGGTCCCTG AGATTGCAGG GCCATGTTCC TCAGACTTCT TTACAGCTGC
 GTCATCCTGT TTACCAGAAT ATAAAATTAC ATGTTTGCAA ACTACGCAAA TGTAGAACCG
 AAGCTCCTCT AAGTATGGAG TAGAGG

Submitted Frequency for ss5586199

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
P1 - MULTI-NATIONAL	204	-=0.99500000	+=0.00500000	0.010 +/-0.014	-/-=0.99000001 +/-=0.01000000	0.010	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	-=1.00000000	+=0.00000000		-/-=1.00000000 +/-=0.00000000		08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	-=1.00000000	+=0.00000000		-/-=1.00000000 +/-=0.00000000		08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	-=0.97899997	+=0.02100000	0.041 +/-0.056	-/-=0.95800000 +/-=0.04200000	0.042	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	-=1.00000000	+=0.00000000		-/-=1.00000000 +/-=0.00000000		08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586199

No sufficient data to compute Hardy-weinberg probability for ss5586199.

Submitted individual genotype for ss5586199

There is no individual genotype data for ss5586199.

Disclaimer Privacy statement