Submitted SNP(ss) Details: ss5586208

Submitted SNP(ss) Details: ss5586208

Submitter
Handle	SNP500CANCER
Submitter SNP ID	PARP4-01
RefSNP(rs#)	rs13428
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_009799.11
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	PARP4-01

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 6
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment

Platform: Sequencing Primer F: GCATCAAACTGTCTGGGAG, Temp: 47.4, GC Content:52.63, Product Size: 410 Primer R: TTAGCATCCTCTGAGTGGC, Temp: 47.4, GC Content:52.63
Platform: Sequencing Primer F: GGGAAGATAGGAACCAACGGC, Temp: 56.3, GC Content:57.14, Product Size: 415 Primer R: GATGGGTGGGAAGTCAAGTGC, Temp: 55.6, GC Content:57.14
Platform: TaqMan Forward primer: TTTCCACACcTCCACGTTCCAAATTT, Amount: 700 nM Reverse primer: TTTCCACACgTCCACGTTCCAAATT, Amount: 700 nM Probe 1: gactctgtccaacttaaatccaatagc, Amount: 100 nM Probe 2: tggaattatctcagccagaagtttc, Amount: 100 nM Annealing temperature: 64 C

Fasta sequence (Legend)

 GCTTGATTGT TCTTTTTATT CTGTGTTTTC CCCTTACGTT AATAATTCTG TCTTCTGGGC
 AGTCTCTTTT AGCATCCTCT GAGTGGCCAG AATTACGTTT ATCCAAACGA AAACATAGGA
 AAATTCCATT TTCCAAAAGA AAAATGGAAT TATCTCAGCC AGAAGTTTCT GAAGATTTTG
 AAGAGGATGS CTTAGGTGTA CTACCAGCTT TCACATCAAA TTTGGAACGT GGA
 S
 GTGTGGAAAA GCTATTGGAT TTAAGTTGGA CAGAGTCATG TAAACCAACA GCAACTGAAC
 CACTATTTAA GAAAGTCAGT CCATGGGAAA CATCTACTTC TAGCTTTTTT CCTATTTTGG
 CTCCGGCCGT TGGTTCCTAT CTTMCCCCGA CTRCCCGCGC TCACAGTCCT GCTTCCTTGT
 CTTTTGCCTC ATATCGTCAG GTAGCTAGTT TCGGTTCAGC TGCTCCTCCC AGACAGTTTG
 ATGCATCT

Submitted Frequency for ss5586208

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
CEPH - MULTI-NATIONAL	184	G=0.62000000	C=0.38000000	0.471 +/-0.024			1_2004	SEQUENOM
P1 - MULTI-NATIONAL	204	C=0.55900002	G=0.44100001	0.493 +/-0.012	C/G=0.41200000 C/C=0.35299999 G/G=0.23500000	0.412	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	C=0.54200000	G=0.45800000	0.496 +/-0.017	C/C=0.37500000 C/G=0.33300000 G/G=0.29200000	0.333	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C=0.65200001	G=0.34799999	0.454 +/-0.060	C/C=0.43500000 C/G=0.43500000 G/G=0.13000000	0.435	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C=0.53200001	G=0.46799999	0.498 +/-0.011	C/G=0.48400000 C/C=0.28999999 G/G=0.22600000	0.484	08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=0.52100003	G=0.47900000	0.499 +/-0.009	C/G=0.37500000 C/C=0.33300000 G/G=0.29200000	0.375	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586208

No sufficient data to compute Hardy-weinberg probability for ss5586208.

Submitted individual genotype for ss5586208

There is no individual genotype data for ss5586208.

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