Submitted SNP(ss) Details: ss5586213

Submitted SNP(ss) Details: ss5586213

Submitter
Handle	SNP500CANCER
Submitter SNP ID	PARP4-09
RefSNP(rs#)	rs4986819
Submitted Batch ID	08272003_update
Submitted Date	Oct 28, 2003
Publication Cited	N.D.
First entry to dbSNP	Sep 26 2002 12:00:00:000AM

Resource Links
GenBank Accession	NT_009799.11
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	PARP4-09

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment

Platform: Sequencing Primer F: TATTTCACTTTTCAACCACG, Temp: 45.4, GC Content:35, Product Size: 363 Primer R: ACAGGATACAGTAGAGAAGATTTG, Temp: 46.2, GC Content:37.5
Platform: TaqMan Forward primer: AGAAAGTTGTCTTACTCTAC, Amount: 900 nM Reverse primer: AGAAAGTTGTCTTAGTCTAC, Amount: 900 nM Probe 1: CGGCATCTCAATAGACATAGTCAAAG, Amount: 200 nM Probe 2: TGGTTTTCTGGTTTAAATTTCCATTTAG, Amount: 200 nM Annealing temperature: 60 C

Fasta sequence (Legend)

 ATTTGTATAA AAGAAATAGG AACAAAGCAA AGGTTAGTAC CTAAAATATA AAACCTGTCA
 ATTCAATGGA TATTGGTTTT CTGGTTTAAA TTTCCATTTA GAATTGTTTG AAATAATTTC
 AGATAGAAAT TTAAGATYGT AGA
 S
 TAAGACAACT TTCTCTTCAT TTTTGCTAGC TTCTCTTTGA CTATGTCTAT TGAGATGCCG
 TATGTGATTG AATTCATTTT CAGTGATACA CATGAACTGA AACAAAAGGT TAGTGCATCT
 TTGATTTCTT AAGAGCTGTT ATTTTAACAC TACTTTTATC TTATCAAAGC AATGTATGCA
 C

Submitted Frequency for ss5586213

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
P1 - MULTI-NATIONAL	202	C=0.88599998	G=0.11400000	0.202 +/-0.049	C/C=0.80199999 C/G=0.16800000 G/G=0.03000000	0.168	08272003	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	C=0.90300000	G=0.09700000	0.175 +/-0.086	C/C=0.80599999 C/G=0.19400001 G/G=0.00000000	0.194	08272003	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	C=0.97799999	G=0.02200000	0.043 +/-0.058	C/C=0.95700002 C/G=0.04300000 G/G=0.00000000	0.043	08272003	SNP500CANCER
PAC1 - MULTI-NATIONAL	46	C=1.00000000	G=0.00000000		C/C=1.00000000 C/G=0.00000000 G/G=0.00000000		08272003	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	C=0.66700000	G=0.33300000	0.444 +/-0.064	C/C=0.45800000 C/G=0.41700000 G/G=0.12500000	0.417	08272003	SNP500CANCER

dbSNP summary of Genotypes for ss5586213

No sufficient data to compute Hardy-weinberg probability for ss5586213.

Submitted individual genotype for ss5586213

There is no individual genotype data for ss5586213.

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