Submitter | Handle | SNP500CANCER | Submitter SNP ID | PARP4-14 | RefSNP(rs#) | rs1050114 | Submitted Batch ID | 08272003_update | Submitted Date | Oct 28, 2003 | Publication Cited | N.D. | First entry to dbSNP | Sep 26 2002 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_009799.11
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | PARP4-14 |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | SEQUENCING | Ascertainment Samplesize | 204 | Population | P1 |
| Allele | Observed Allele | A/G | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | Unknown |
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Comment | Platform: Sequencing Primer F: GCATCAAACTGTCTGGGAG, Temp: 47.4, GC Content:52.63, Product Size: 410 Primer R: TTAGCATCCTCTGAGTGGC, Temp: 47.4, GC Content:52.63 Platform: TaqMan Forward primer: AAGACAAGGAAGCAGGACTGTGA, Amount: 900 nM Reverse primer: CCGACTACCCGCGC, Amount: 900 nM Probe 1: CGACTGCCCGCGC, Amount: 200 nM Probe 2: CGGCCGTTGGTTCCTATCTT, Amount: 200 nM Annealing temperature: 60 C
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>gnl|dbSNP|ss5586217|allelePos=221|len=449|taxid=9606|alleles='A/G'|mol=Genomic TTCTGAAGAT TTTGAAGAGG ATGSCTTAGG TGTACTACCA GCTTTCACAT CAAATTTGGA
ACGTGGASGT GTGGAAAAGC TATTGGATTT AAGTTGGACA GAGTCATGTA AACCAACAGC
AACTGAACCA CTATTTAAGA AAGTCAGTCC ATGGGAAACA TCTACTTCTA GCTTTTTTCC
TATTTTGGCT CCGGCCGTTG GTTCCTATCT TMCCCCGACT
R
CCCGCGCTCA CAGTCCTGCT TCCTTGTCTT TTGCCTCATA TCGTCAGGTA GCTAGTTTCG
GTTCAGCTGC TCCTCCCAGA CAGTTTGATG CATCTCAATT CAGCCAAGGC CCTGTGCCTG
GCACTTGTGC TGACTGGATC CCACAGTCGG CGTCTTGTCC CACAGGACCT CCCCAGAACC
CACCTTCTTC ACCCTATTGT GGCATTGTTT TTTCAGGGAG CTCATTAA
Population ID -Class | Total Sample (2N) | Founder (2N) | Major Allele Freq. | Minor Allele Freq. | Genotype Freq. | HWE Goodness of Fit | Data Source | HAPMAP-ASW | 96 | 96 | G=0.90625000
| A=0.09375000 | G/G=0.81250000 A/G=0.18750000
| Pr(chiSq=0.092,df=1) =1.000 | Genotype Freq. | HAPMAP-MEX | 100 | 100 | G=0.98000002
| A=0.02000000 | G/G=0.95999998 A/G=0.04000000
| Pr(chiSq=0.001,df=1) =1.000 | Genotype Freq. | HAPMAP-TSI | 176 | 176 | G=0.99431819
| A=0.00568182 | G/G=0.98863637 A/G=0.01136364
| Pr(chiSq=0.000,df=1) =1.000 | Genotype Freq. | HAPMAP-LWK | 180 | 180 | G=0.76111114
| A=0.23888889 | G/G=0.56666666 A/G=0.38888890 A/A=0.04444445
| Pr(chiSq=0.434,df=1) =0.527 | Genotype Freq. | HapMap-CEU | 226 | 226 | G=0.98672569
| A=0.01327434 | G/G=0.97345132 A/G=0.02654867
| Pr(chiSq=0.001,df=1) =1.000 | Genotype Freq. | HapMap-YRI | 226 | 226 | G=0.78761059
| A=0.21238938 | G/G=0.60176992 A/G=0.37168142 A/A=0.02654867
| Pr(chiSq=1.391,df=1) =0.251 | Genotype Freq. | HAPMAP-MKK | 286 | 286 | G=0.89160842
| A=0.10839161 | G/G=0.79020977 A/G=0.20279720 A/A=0.00699301
| Pr(chiSq=0.346,df=1) =0.584 | Genotype Freq. |
There is no individual genotype data for ss5586217.
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