| Submitter | | Handle | SNP500CANCER | | Submitter SNP ID | PTEN-01 | | RefSNP(rs#) | rs701848 | | Submitted Batch ID | 08272003_update | | Submitted Date | Oct 28, 2003 | | Publication Cited | N.D. | | First entry to dbSNP | Sep 26 2002 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_033890.3
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | PTEN-01 |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | SEQUENCING | | Ascertainment Samplesize | 204 | | Population | P1 |
| | Allele | | Observed Allele | C/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
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| Comment | Platform: Sequencing Primer F: GTGCAGTGTTGAATCATTTC, Temp: 53.97, GC Content:40, Product Size: 309 Primer R: CAGACCACAGCTAGTGAACA, Temp: 54.81, GC Content:50
Platform: TaqMan Forward primer: ACTAGGGCTTCAATTT, Amount: 900 nM Reverse primer: CATAGTGCTCCCCCGAGTTG, Amount: 900 nM Probe 1: CTAGGGCCTCAATTT, Amount: 200 nM Probe 2: GTATGCAGTCTGGGCATATCAAATA, Amount: 200 nM Annealing temperature: 60 C
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>gnl|dbSNP|ss5586850|allelePos=170|len=357|taxid=9606|alleles='C/T'|mol=Genomic GCTGCACACA AAAAAAAGAC ATTTGATTTT TCAGTAGAAA TTGTCCTACA TGTGCTTTAT
TGATTTGCTA TTGAAAGAAT AGGGtttttt tttttttttt tttttttttt tttAAATGTG
CAGTGTTGAA TCATTTCTTC ATAGTGCTCC CCCGAGTTGG GACTAGGGC
Y
TCAATTTCAC TTCTTAAAAA AAATCATCAT ATATTTGATA TGCCCAGACT GCATACGATT
TTAAGCGGAG TACAACTACT ATTGTAAAGC TAATGTGAAG ATATTATTAA AAAGGTTTTT
TTTTCCARAA ATTTGGTGTC TTCAAATTAT ACCTTCACCT TGACATTTGA ATATCCAGCC
ATTTTGT
No sufficient data to compute Hardy-weinberg probability for ss5586850.
There is no individual genotype data for ss5586850.
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