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Submitted SNP(ss) Details: ss5631593           
Submitter
HandleSC_JCM
Submitter SNP IDNT_004350.12_216823
RefSNP(rs#)rs3982632
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize5
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/!t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:P1_1B479C02.Q1CSCFPOSITION:527QUALITY:35SEQUENCE:P1_3A425H08.P1CSCFPOSITION:510QUALITY:25SEQUENCE:P1_1A388C10.P1CSCFPOSITION:520QUALITY:37SEQUENCE:P1_1B952F02.P1CSCFPOSITION:518QUALITY:29

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5631593|allelePos=201|len=401|taxid=9606|alleles='T/G'|mol=Genomic
 AAGTGCCCAC CTTGGCTCGT GGCTCTCACT GCAACGGGAA AGCCACAGAC TGGGGTGAAG
 AGTTCAGTCA CATGCGACCG GTGACTCCCT GTCCCCACCC CCATGACACT CCCCAGCCCT
 CCAAGGCCAC TGTGTTTCCC AGTTAGCTCA GAGCCTCAGT CGATCCCTGA CCCAGCACCG
 GGCACTGATG AGACAGCGGC
 K
 GTTTGAGGAG CCACCTCCCA GCCACCTCGG GGCCAGGGCC AGGGTGTGCA GCAccactgt
 acaatgggga aactggccca gagaggtgag gcagcttgcc tggggtcaca gagcaaggca
 aaagcagcgc tgggTACAAG CTCAAAACCA TAGTGCCCAG GGCACTGCCG CTGCAGGCGC
 AGGCATCGCA TCACACCAGT

  Submitted Frequency for ss5631593 back to top
There is no frequency submission for ss5631593.


  dbSNP summary of Genotypes for ss5631593 back to top
No sufficient data to compute Hardy-weinberg probability for ss5631593.


  Submitted individual genotype for ss5631593 back to top
There is no individual genotype data for ss5631593.