Submitted SNP(ss) Details: ss5656918

Submitted SNP(ss) Details: ss5656918

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_015926.10_105120
RefSNP(rs#)	rs667089
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_015926.10
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	T/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S144P6442221FB2.T0.SCFPOSITION:335QUALITY:43

Fasta sequence (Legend)

 CTCTCAGAGT TGATGGTCCC CAAACATCAG ATGTGAGGTG TGTCTCTGAG AATGGGCTTA
 TACAGATGCC ACGAAGAAAG ATGCTGAAAC TCCAGACCAT TACTATAGGT AGTCATGtat
 ccatccatcc atttatctat ctatctaCTC AAAATTTATT TATTCTTCCT TTCAAAGGAA
 GATTTACTGA ATGTCTACTG
 W
 GGTCTAGATA TGGTGCAATG TAAAAATATC AAATATAAAA TGAGTAAGAC TCTTGGAGTC
 TATGGTCAGT AAGGAAGAAA GGAATCAAAT GGTTTATCAC AAAACAATGA AAGAGGTGTT
 GGAATTGAAG CTATATAAAG GATTGTGTGA ACATATTGGA AGGAACAAAT TTTCTTATGG
 ATAGGTTTGA CAGTTTTCAC

Submitted Frequency for ss5656918

There is no frequency submission for ss5656918.

dbSNP summary of Genotypes for ss5656918

No sufficient data to compute Hardy-weinberg probability for ss5656918.

Submitted individual genotype for ss5656918

There is no individual genotype data for ss5656918.

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