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Submitted SNP(ss) Details: ss5724398           
Submitter
HandleSC_JCM
Submitter SNP IDNT_026437.8_33626579
RefSNP(rs#)rs2400669
Submitted Batch ID02-JAN-2003
Submitted DateJan 10, 2003
Publication Cited[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJan 10 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
SEQUENCE:JAM20C08.B1POSITION:599QUALITY:47

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss5724398|allelePos=201|len=401|taxid=9606|alleles='T/G'|mol=Genomic
 ACCTGACTCC AACTTGGCTG CGGCCTGCTT TCTGTCTCAA AGGGAAAGCT GCATTTTTAC
 TTGAGGTTTA GCCTGCCACA TAATCTAAAC ATGGACAAAG GGCAACGGAG TGACCACAGC
 TACAGCCAAG GCACTAATTG CACCAATTCA AATTCATAAT TTTAAAAAGT TACCAAATTA
 CACTAACTTG CTAAAACAAG
 K
 AGAGGCACTT AATAGATATT TCACTTCCTT AAACTAAGAA CTCTCAAACT ACAGCATGTA
 AAAATCAGAT ACACagccag gtgcagtggc tcacgcctat aatcccagca ctttggtagg
 cagaggtggg aggatctctc gagcccaaga gttcaagacc agcctgggca acatggcaaa
 acctcacctc tacaaaaaaA

  Submitted Frequency for ss5724398 back to top
There is no frequency submission for ss5724398.


  dbSNP summary of Genotypes for ss5724398 back to top
No sufficient data to compute Hardy-weinberg probability for ss5724398.


  Submitted individual genotype for ss5724398 back to top
There is no individual genotype data for ss5724398.

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