Submitted SNP(ss) Details: ss5775184

Submitted SNP(ss) Details: ss5775184

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_004321.12_1055692
RefSNP(rs#)	rs2027548
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_004321.12
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/A
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c/t_g

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:JEM59F11.B1POSITION:164QUALITY:35

Fasta sequence (Legend)

 AGAGCTTGGA ATCAGGTAGG AAAGAGAATC GTTTAACCAA ATAGGGCTGG GTTTTATTAG
 GCAAAAGGGA CCGCAGTGTT ACAGAATCTG GGCAAGATGT CACTGAGGGT CTCATTATCT
 GGATAAAGGC AATGACCAGA ACAAAATAAA ACCATTTCAT GCTGTATCCC AGTGACACAG
 GCTGGGCCTC AGTGAGTTGA
 R
 GCTCCTCGAT AAACCATTCA TAAATGTACG GAAGGAAATC ATGTGAACAC GTAGGTAAAC
 GGAACGACTG CTCAGACAGG GCTCACTAGA CGCTGTCCCC TCCCTGAACA CTCATGTACT
 GTACTCTGTG GCTATGGTCC CGCACTGACA CCACCACTGT CACCACCACT GCCATCCACA
 GGTGTGTCAC CTACTTCACT

Submitted Frequency for ss5775184

There is no frequency submission for ss5775184.

dbSNP summary of Genotypes for ss5775184

No sufficient data to compute Hardy-weinberg probability for ss5775184.

Submitted individual genotype for ss5775184

There is no individual genotype data for ss5775184.

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